Re: A remant of relax 1.2 ? -- August 24, 2009 - 19:57

Hi Ed,

Thanks for fixing this issue !


Séb (back after very long holidays)


Edward d'Auvergne wrote:
> Hi,
>
> This is now fixed, as of r9250.  Thanks for the report.  I think this
> was just a mistake rather than a 1.2 relic, as Scientific python can
> still be used in the 1.3 line - just that it is not an absolute
> dependency.
>
> Cheers,
>
> Edward
>
>
> On Mon, May 25, 2009 at 6:12 PM, Sébastien
> Morin<sebastien.morin.1@xxxxxxxxx> wrote:
>   
> > Hi,
> >
> > On a machine where Scientific Python is not installed, the output from
> > the system tests for relax 1.3 shows an error related to Scientific Python:
> >
> > ====================
> > relax> structure.read_pdb(file='tylers_peptide_trunc.pdb',
> > dir='/home/semor/relax-1.3/test_suite/shared_data/structures',
> > read_mol=None, set_mol_name=None, read_model=None, set_model_num=None,
> > parser='scientific')
> > Traceback (most recent call last):
> >  File
> > "/home/semor/pse-4/collaborations/relax/relax-1.3/test_suite/system_tests/model_free.py",
> > line 1044, in test_tylers_peptide
> >  File
> > "/home/semor/pse-4/collaborations/relax/relax-1.3/prompt/interpreter.py",
> > line 273, in run
> >  File
> > "/home/semor/pse-4/collaborations/relax/relax-1.3/prompt/interpreter.py",
> > line 534, in run_script
> >  File
> > "/home/semor/pse-4/collaborations/relax/relax-1.3/prompt/interpreter.py",
> > line 430, in interact_script
> >  File
> > "/home/semor/relax-1.3/test_suite/system_tests/scripts/tylers_peptide.py",
> > line 14, in <module>
> >    structure.read_pdb(file='tylers_peptide_trunc.pdb',
> > dir=DATA_PATH+'structures', parser='scientific')
> >  File
> > "/home/semor/pse-4/collaborations/relax/relax-1.3/prompt/structure.py",
> > line 464, in read_pdb
> >  File
> > "/home/semor/pse-4/collaborations/relax/relax-1.3/generic_fns/structure/main.py",
> > line 242, in read_pdb
> >  File
> > "/home/semor/pse-4/collaborations/relax/relax-1.3/generic_fns/structure/scientific.py",
> > line 59, in __init__
> > RelaxError: RelaxError: The Scientific python PDB module
> > Scientific.IO.PDB could not be imported.
> > ====================
> >
> > As mentioned above, Scientific Python is not installed on this system...
> >
> > I thought that Scientific Python was not required for relax 1.3 (see
> > http://www.nmr-relax.com/download.html)...
> >
> > Is this a remnant of relax 1.2 ?
> >
> > Regards,
> >
> >
> > Séb  :)
> >
> > --
> > Sébastien Morin
> > PhD Student
> > S. Gagné NMR Laboratory
> > Université Laval & PROTEO
> > Québec, Canada
> >
> >
> > _______________________________________________
> > relax (http://nmr-relax.com)
> >
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> >     
>
>
>   


-- 
Sébastien Morin
PhD Student
S. Gagné NMR Laboratory
Université Laval & PROTEO
Québec, Canada