Re: [task #6847] The Bieri graphical user interface. -- March 15, 2010 - 23:59

Ah, ok.  This is just Ubuntu bundling a buggy PyMOL version.  This
will be useful to have on the records.  Installing another PyMOL
should fix problems (but only if the install generates Python
site-packages for PyMOL).  You could try their open source repository
directly with:

$ svn co https://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol

and installing that.

Regards,

Edward



On 15 March 2010 22:20, Michael Bieri <michael.bieri@xxxxxx> wrote:
> I got the same error when importing python in a fake script
>
> ---
> import pymol
>
> print 'test'
>
> -------
>
>
> the error was again:
> Traceback (most recent call last):
>  File "pymo.py", line 1, in <module>
>    import pymol
>  File "/usr/lib/pymodules/python2.6/pymol/__init__.py", line 255, in
> <module>
>    test_path = os.path.join(os.environ['PYMOL_PATH'],"freemol")
>  File "/usr/lib/python2.6/UserDict.py", line 22, in __getitem__
>    raise KeyError(key)
> KeyError: 'PYMOL_PATH'
>
>
> I am not sure if the installation is incorect or broken, as I installed
> it with synaptic, the package manager of Ubuntu. I will try it
> differently and let you know.
>
> cheers
>
> Edward d'Auvergne schrieb:
> > Hi,
> >
> > I have been trying in the last few revisions in the 1.3 line to more
> > tightly integrate PyMOL by using the PyMOL packages if installed
> > rather than running it on the command line.  This will be very useful
> > for integrating the OpenGL canvas of PyMOL into the GUI in the future
> > (as Maestro does now, http://www.schrodinger.com/products/14/12/).
> > Therefore this problem is an indication that the pymol package is
> > incorrectly installed on your system.  This is easy to test.  Run
> > python and then type 'import pymol'.  Do you get the same error?  I
> > prefer not to catch this error in relax as the user will not know that
> > the PyMOL installation is broken.
> >
> > Regards,
> >
> > Edward
> >
> >
> > P. S.  It is better to ask these questions directly on the relax-devel
> > mailing list.  The reason is because discussions should be held on the
> > mailing lists and not the trackers - the trackers are not designed for
> > this purpose.  Cheers.
> >
> >
> >
> > On 14 March 2010 23:55, Michael Bieri <NO-REPLY.INVALID-ADDRESS@xxxxxxx> 
> > wrote:
> >
> > > Follow-up Comment #41, task #6847 (project relax):
> > >
> > > Hi Edward
> > >
> > > I am not sure if this is a bug or just an error after merging the 1.3 in
> > > relaxGUI.
> > >
> > > If I try to run relaxGUI, I get the following error:
> > >
> > > Traceback (most recent call last):
> > >  File "./relax", line 38, in <module>
> > >    import dep_check
> > >  File
> > > "/home/michael/Dokumente/Experiments/Programming/relaxGUI/100315_GUI/singleton/bieri_gui/dep_check.py",
> > > line 162, in <module>
> > >    import pymol
> > >  File "/usr/lib/pymodules/python2.6/pymol/__init__.py", line 255, in
> > > <module>
> > >    test_path = os.path.join(os.environ['PYMOL_PATH'],"freemol")
> > >  File "/usr/lib/python2.6/UserDict.py", line 22, in __getitem__
> > >    raise KeyError(key)
> > > KeyError: 'PYMOL_PATH'
> > >
> > >
> > > There seems to be a problem with pymol.
> > >
> > > Cheers
> > >
> > >    _______________________________________________________
> > >
> > > Reply to this item at:
> > >
> > >  <http://gna.org/task/?6847>
> > >
> > > _______________________________________________
> > >  Nachricht geschickt von/durch Gna!
> > >  http://gna.org/
> > >
> > >
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