There is a problem with the dummy file as the function reading the file
requires a string:
Traceback (most recent call last):
File "gui_bieri/analyses/auto_rx_base.py", line 402, in execute_thread
File "auto_analyses/relax_fit.py", line 87, in __init__
File "auto_analyses/relax_fit.py", line 124, in run
File "prompt/deselect.py", line 146, in read
File "arg_check.py", line 495, in is_str
raise RelaxStrError(name, arg)
relax_errors.RelaxStrError: RelaxError: The file name argument
'<relax_io.DummyFileObject instance at 0x9ea1f8c>' must be a string.
Can this get solved by changing arg_check.py or do I have to call the
relax_io.DummyFileObject differently?
Edward d'Auvergne wrote:
This should be a nice short term fix. This can be redesigned in the
future to use more of the functionality already present in relax, i.e.
all the select and deselect user fns.
Cheers,
Edward
On 12 April 2010 04:37, <michael.bieri@xxxxxxxxxxxxx> wrote:
Author: michaelbieri
Date: Mon Apr 12 04:37:43 2010
New Revision: 11062
URL: http://svn.gna.org/viewcvs/relax?rev=11062&view=rev
Log:
relaxGUI creates a dummy file for unresolved spins that will be used in
relax_fit.py
Modified:
branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py
Modified: branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py?rev=11062&r1=11061&r2=11062&view=diff
==============================================================================
--- branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py (original)
+++ branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py Mon Apr 12
04:37:43 2010
@@ -26,6 +26,7 @@
# Python module imports.
from os import sep
+from string import replace
import sys
import thread
import time
@@ -34,6 +35,7 @@
# relax module imports.
from auto_analyses.relax_fit import Relax_fit
from data import Relax_data_store; ds = Relax_data_store()
+from relax_io import DummyFileObject
# relaxGUI module imports.
from gui_bieri.analyses.project import open_file
@@ -265,7 +267,12 @@
data.mc_num = 500
# Unresolved resiudes
- data.unresolved = self.data.unresolved
+ file = DummyFileObject
+ entries = self.data.unresolved
+ entries = replace(entries, ',', '\n')
+ file.write(entries)
+ file.close()
+ data.unresolved = file
# Structure File
data.structure_file = self.data.structure_file
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Re: r11062 - /branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py