URL:
<http://gna.org/bugs/?17361>
Summary: Failure of reading relax 1.2.x results files when
simulation data is present.
Project: relax
Submitted by: bugman
Submitted on: Mon 20 Dec 2010 01:08:39 PM GMT
Category: relax's source code
Severity: 3 - Normal
Priority: 5 - Normal
Status: None
Privacy: Public
Assigned to: bugman
Originator Name:
Originator Email:
Open/Closed: Open
Discussion Lock: Any
Release: Repository: 1.3 line
Operating System: All systems
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Details:
= Description =
The reading of version 1.2.x results files by 1.3.x relax versions fails when
Monte Carlo simulation data is present.
= Error message =
relax> pipe.create(pipe_name='orig', pipe_type='mf')
relax> results.read(file='trunc.bz2', dir=None)
Opening the file 'trunc.bz2' for reading.
relax 1.2 model-free results file.
Generating the sequence.
Setting the diffusion tensor.
Diffusion type: ellipsoid
RelaxWarning: The PDB file 1G68_plus_H.pdb.pdb cannot be found, no structures
will be loaded.
Loading simulations.
sim_0
{}
Traceback (most recent call last):
File "/data/relax/relax-1.3/relax", line 358, in <module>
Relax()
File "/data/relax/relax-1.3/relax", line 126, in __init__
self.interpreter.run(self.script_file)
File "/data/relax/relax-1.3/prompt/interpreter.py", line 293, in run
return run_script(intro=self.__intro_string, local=locals(),
script_file=script_file, quit=self.__quit_flag,
show_script=self.__show_script, raise_relax_error=self.__raise_relax_error)
File "/data/relax/relax-1.3/prompt/interpreter.py", line 595, in
run_script
return console.interact(intro, local, script_file, quit,
show_script=show_script, raise_relax_error=raise_relax_error)
File "/data/relax/relax-1.3/prompt/interpreter.py", line 481, in
interact_script
exec_script(script_file, local)
File "/data/relax/relax-1.3/prompt/interpreter.py", line 372, in
exec_script
runpy.run_module(module, globals)
File "/usr/lib64/python2.6/runpy.py", line 140, in run_module
fname, loader, pkg_name)
File "/usr/lib64/python2.6/runpy.py", line 34, in _run_code
exec code in run_globals
File
"/media/disk/relax/sebastian/for_Edward/PSE-4/relax_gui/run1/comparison/comp.py",
line 4, in <module>
results.read ('trunc.bz2')
File "/data/relax/relax-1.3/prompt/results.py", line 88, in read
results.read(file=file, directory=dir)
File "/data/relax/relax-1.3/generic_fns/results.py", line 113, in read
read_function(file_data)
File "/data/relax/relax-1.3/specific_fns/model_free/results.py", line 1079,
in read_columnar_results
self._read_1_2_results(file_data, verbosity)
File "/data/relax/relax-1.3/specific_fns/model_free/results.py", line 726,
in _read_1_2_results
self._load_model_free_data(file_line, col, data_set, spin, spin_id,
verbosity)
File "/data/relax/relax-1.3/specific_fns/model_free/results.py", line 492,
in _load_model_free_data
cdp.chi2_sim.append(eval(spin_line[col['chi2']]))
AttributeError: 'dict' object has no attribute 'append'
_______________________________________________________
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[bug #17361] Failure of reading relax 1.2.x results files when simulation data is present.