mailRe: relax gui-testing branch


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Posted by Sébastien Morin on August 05, 2011 - 09:21:
Hi Ed,
Thanks for working on this. More and more people switch from Linux to Mac since they changed the OS to be Linux based. It is good that you now have access to such a system for testing. 

Cheers,


Séb  :)


On 11-07-27 11:30 AM, Edward d'Auvergne wrote:

Hi,

I'll go through soon, once all of the GUI is functional on GNU/Linux
and add the necessary polish for Mac OS X and MS Windows.  There are a
lot of defaults which look good on GNU/Linux, but horrible on a Mac.

Regards,

Edward


On 25 July 2011 09:46, Sébastien Morin<sebastien.morin@xxxxxxxxx>  wrote:

Hi Ed,

Nice job !

Revisions r13842-r13844 fixed the issue ! After choosing "File / New
analysis", going through the process, and finally pressing "Finish", the
menu items don't turn gray and relax is still responsive.

In my case, also, the three gui-tests still pass without error.

Thanks !


Séb  :)


On 11-07-22 7:33 PM, Edward d'Auvergne wrote:

Hi,

When I run the GUI, the R1 test fails on my system.  So there must be
differences between Mac OS X versions.  The message is quite strange,
and a window appears with the title 'wxPython: stdout/sterr', and then
at the end I get a "Bus error" after the tests finish.  Then after a
while a new window appears saying that python quit unexpectedly.  This
is probably a GUI difference between GNU/Linux and Mac OS X which will
need to be solved :S  This is the output:

----------------------
#############
# GUI tests #
#############


.E.
======================================================================
ERROR: Test the r1 analysis.
----------------------------------------------------------------------
Traceback (most recent call last):
   File
"/Users/edward/relax/branches/gui_testing/test_suite/gui_tests/rx.py",
line 108, in test_r1_analysis
     analysis.field_nmr_frq.SetValue(str_to_gui('600'))
AttributeError: 'NoneType' object has no attribute 'field_nmr_frq'

----------------------------------------------------------------------
Ran 3 tests in 170.973s

FAILED (errors=1)




###################################
# Summary of the relax test suite #
###################################


# Optional packages/modules
###########################

No tests skipped due to missing modules.

# Synopsis
##########

GUI tests ....................................................... [ Failed
]



Bus error
----------------------



As for the error you see with the new analysis, that is quite strange.
  I see something completely different!

----------------------
Traceback (most recent call last):
   File
"/Users/edward/relax/branches/gui_testing/gui/analyses/__init__.py",
line 289, in menu_new
     data = self.new_wizard.run()
   File "/Users/edward/relax/branches/gui_testing/gui/analyses/wizard.py",
line 60, in run
     setup = self.wizard.run(modal=True)
   File "/Users/edward/relax/branches/gui_testing/gui/wizard.py", line
1395, in run
     self.Destroy()
   File
"/var/tmp/wxWidgets/wxWidgets-13~231/2.6/DSTROOT/System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/wx-2.8-mac-unicode/wx/_core.py",
line 14501, in __getattr__
wx._core.PyDeadObjectError: The C++ part of the Wiz_window object has
been deleted, attribute access no longer allowed.
----------------------

After this the GUI is still responsive.  Without the debug flag, it
appears as if the new analysis wizard does nothing, but looking at the
relax controller reveals this message.

I can also see that there is going to be a lot of polish required to
make this look good on a Mac.  The wx error dialog is missing the
graphic, so we would need to create a custom dialog for relax with
graphic.  And the height of GUI elements are different so we would
need to either fix some heights with SetSize() or to centre the
elements with wx.ALIGN_CENTRE_VERTICAL.

Regards,

Edward


P. S.  I need to get a copy of Mac OS X Server (personal edition) on a
VirtualBox VM to speed up this work.  My Mac access is not very good
at the moment, so it's taking hours to test this properly.  Fink also
takes ages just to install some basics such as gvim :S




On 22 July 2011 15:12, Sébastien Morin<sebastien.morin.1@xxxxxxxxx>
  wrote:

Hi Ed,

The gui tests (ran from "./relax --gui-test") all pass, although with
this
additional output after the relax results:

=====
2011-07-22 15:12:20.339 Python[42505:613] *** attempt to pop an unknown
autorelease pool (0x10334ca00)
=====

Thanks for reminding me of the "-d" option. However, for this case, since
the gui crashes, there is no output and the only way out is to type "ctrl
c"
on the command line, thus killing the gui and its potential output... The
only way I can get and output is when kill relax through the command
"kill".
Then, Mac OSX pops-up an error window with the text below.

All the best,


Séb  :)


========
Process:         Python [10541]
Path:

  
/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier:      org.python.python
Version:         2.7.1 (2.7.1)
Code Type:       X86-64 (Native)
Parent Process:  bash [1542]

Date/Time:       2011-07-22 15:09:43.480 +0200
OS Version:      Mac OS X 10.6.8 (10K540)
Report Version:  6

Interval Since Last Report:          263893 sec
Crashes Since Last Report:           1
Per-App Interval Since Last Report:  312 sec
Per-App Crashes Since Last Report:   1
Anonymous UUID:                      6A9BB47A-F272-4B1A-AF3B-9AB7845EF229

Exception Type:  EXC_CRASH (SIGQUIT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Crashed Thread:  0  Dispatch queue: com.apple.main-thread

Thread 0 Crashed:  Dispatch queue: com.apple.main-thread
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Thread 1:  Dispatch queue: com.apple.libdispatch-manager
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Thread 0 crashed with X86 Thread State (64-bit):
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  rip: 0x00007fff862b2d7a  rfl: 0x0000000000000206  cr2:
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Model: MacBookPro5,3, BootROM MBP53.00AC.B03, 2 processors, Intel Core 2
Duo, 2.8 GHz, 4 GB, SMC 1.48f2
Graphics: NVIDIA GeForce 9600M GT, NVIDIA GeForce 9600M GT, PCIe, 512 MB
Graphics: NVIDIA GeForce 9400M, NVIDIA GeForce 9400M, PCI, 256 MB
Memory Module: global_name
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x8D),
Broadcom BCM43xx 1.0 (5.10.131.42.4)
Bluetooth: Version 2.4.5f3, 2 service, 12 devices, 1 incoming serial
ports
Network Service: Ethernet, Ethernet, en0
Network Service: AirPort, AirPort, en1
Serial ATA Device: FUJITSU MJA2500BH FFS G1, 465.76 GB
Serial ATA Device: MATSHITADVD-R   UJ-868
USB Device: Built-in iSight, 0x05ac  (Apple Inc.), 0x8507, 0x24400000 / 2
USB Device: Internal Memory Card Reader, 0x05ac  (Apple Inc.), 0x8403,
0x26500000 / 2
USB Device: Apple Internal Keyboard / Trackpad, 0x05ac  (Apple Inc.),
0x0236, 0x04600000 / 3
USB Device: IR Receiver, 0x05ac  (Apple Inc.), 0x8242, 0x04500000 / 2
USB Device: Optical USB Mouse, 0x046d  (Logitech Inc.), 0xc016,
0x06200000 /
3
USB Device: BRCM2046 Hub, 0x0a5c  (Broadcom Corp.), 0x4500, 0x06100000 /
2
USB Device: Bluetooth USB Host Controller, 0x05ac  (Apple Inc.), 0x8217,
0x06110000 / 4
========




On 11-07-22 3:03 PM, Edward d'Auvergne wrote:

Hi Seb,

I now have a Mac OS X machine I can test this out out.  This type of
bug could actually be any GUI error, so greyed out menus or a
unresponsive GUI doesn't say much.  When testing the GUI, it is best
to run relax using:

$ ./relax -gd

This will then leave STDOUT and STDERR output to the terminal from
where relax was launched, rather than sending the output to the relax
controller.  Note I have also implemented the framework for GUI tests
and already have 3 tests which pass on my GNU/Linux machine.  To use
this, type:

$ ./relax --gui-test

These tests are run as part of the full test suite as well, so:

$ ./relax -x

will test everything.  I haven't looked at polishing or even debugging
the GUI on Mac OS X or MS Windows yet, as I'm still in the fundamental
redesign process.  It is getting close though, and the new GUI design
is quite different.  It should give the flexibility that users
require.  And it should make it easy to add new analyses to the GUI
such as the consistency testing, the reduced spectral density mapping,
the N-state model, and the frame order theory (as well as a custom
analysis where the user is free to do what ever they like.  It is also
quite easy to create user functions windows with the infrastructure
now built into this branch.

Regards,

Edward


P. S. If you work out how to fix something on a Mac yourself, that
information would be quite useful ;)



On 22 July 2011 13:39, Sébastien Morin<sebastien.morin@xxxxxxxxx>
wrote:

Hi Edward,

I just updated my copy of the gui-testing branch and tried it under Mac
OSX.

If choosing "File / New analysis" and going through the process, after
pressing "Finish", all menu times are gray and relax is unresponsive,
as
was
observed before (see bug https://gna.org/bugs/?18197).

This will prevent the use of relax under Mac OSX...

Cheers,


Séb  :)

--
Sébastien Morin, Ph.D.
Postdoctoral Fellow, S. Grzesiek NMR Laboratory
Department of Structural Biology
Biozentrum, Universität Basel
Klingelbergstrasse 70
4056 Basel
Switzerland


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--
Sébastien Morin, Ph.D.
Postdoctoral Fellow, S. Grzesiek NMR Laboratory
Department of Structural Biology
Biozentrum, Universität Basel
Klingelbergstrasse 70
4056 Basel
Switzerland



--
Sébastien Morin, Ph.D.
Postdoctoral Fellow, S. Grzesiek NMR Laboratory
Department of Structural Biology
Biozentrum, Universität Basel
Klingelbergstrasse 70
4056 Basel
Switzerland



_______________________________________________
relax (http://nmr-relax.com)

This is the relax-devel mailing list
relax-devel@xxxxxxx

To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
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--
Sébastien Morin, Ph.D.
Postdoctoral Fellow, S. Grzesiek NMR Laboratory
Department of Structural Biology
Biozentrum, Universität Basel
Klingelbergstrasse 70
4056 Basel
Switzerland

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