mailRe: r17456 - /trunk/docs/latex/consistency_tests.tex


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Posted by Edward d'Auvergne on September 05, 2012 - 16:44:
Hi,

I just realised that this is the part where the sample script has been
reproduced.  Sorry, it would be better to not have the \citet
citations.  The maths should be removed as well.  This is supposed to
be a verbatim copy of the text of the script, so no fancy formatting.

Regards,

Edward


On 5 September 2012 14:49, Sébastien Morin <sebastien.morin@xxxxxxxxx> wrote:
HI,

I just corrected this and more...


Séb  :)



On 12-09-05 2:36 PM, Edward d'Auvergne wrote:

Hi,

I just noticed the reference "Morin \& Gagne (2009a) J. Biomol. NMR,
45: 361-372" in that text!  Could you change it to
"\citet{MorinGagne09}" to fit into the bibtex system?

Cheers,

Edward


On 5 September 2012 14:25,  <sebastien.morin@xxxxxxxxx> wrote:

Author: semor
Date: Wed Sep  5 14:25:48 2012
New Revision: 17456

URL: http://svn.gna.org/viewcvs/relax?rev=17456&view=rev
Log:
Made some corrections to the formatting of math symbols in Latex.


Modified:
     trunk/docs/latex/consistency_tests.tex

Modified: trunk/docs/latex/consistency_tests.tex
URL:
http://svn.gna.org/viewcvs/relax/trunk/docs/latex/consistency_tests.tex?rev=17456&r1=17455&r2=17456&view=diff

==============================================================================
--- trunk/docs/latex/consistency_tests.tex (original)
+++ trunk/docs/latex/consistency_tests.tex Wed Sep  5 14:25:48 2012
@@ -64,7 +64,7 @@
   \\
  Severe artifacts can be introduced if model-free analysis is performed
from inconsistent multiple magnetic field datasets. The use of simple 
tests
as validation tools for the consistency assessment can help avoid such
problems in order to extract more reliable information from spin 
relaxation
experiments. In particular, these tests are useful for detecting
inconsistencies arising from R2 data. Since such inconsistencies can yield
artifactual Rex parameters within model-free analysis, these tests should 
be
use routinely prior to any analysis such as model-free calculations. \\
   \\
-This script will allow one to calculate values for the three consistency
tests J(0), F\_eta and F\_R2. Once this is done, qualitative analysis can 
be
performed by comparing values obtained at different magnetic fields.
Correlation plots and histograms are useful tools for such comparison, 
such
as presented in Morin \& Gagne (2009a) J. Biomol. NMR, 45: 361-372. \\
+This script will allow one to calculate values for the three consistency
tests $J(0)$, $F\_eta$ and $F\_{R_2}$. Once this is done, qualitative
analysis can be performed by comparing values obtained at different 
magnetic
fields. Correlation plots and histograms are useful tools for such
comparison, such as presented in Morin \& Gagne (2009a) J. Biomol. NMR, 
45:
361-372. \\
   \\
   \\
  References \\
@@ -76,18 +76,18 @@
   \\
  The origins of the equations used in the approach: \\
   \\
-    J(0): \\
+    $J(0)$: \\
          Farrow et al. (1995) Spectral density function mapping using
15N relaxation data exclusively. J. Biomol. NMR, 6: 153-162.
http://dx.doi.org/10.1007/BF00211779 \\
   \\
-    F\_eta: \\
-        Fushman et al. (1998) Direct measurement of 15N chemical shift
anisotropy in solution. J. Am. Chem. Soc., 120: 10947-10952.
http://dx.doi.org/10.1021/ja981686m \\
- \\
-    F\_R2: \\
-        Fushman et al. (1998) Direct measurement of 15N chemical shift
anisotropy in solution. J. Am. Chem. Soc., 120: 10947-10952.
http://dx.doi.org/10.1021/ja981686m \\
+    $F\_eta$: \\
+        Fushman et al. (1998) Direct measurement of $^{15}$N chemical
shift anisotropy in solution. J. Am. Chem. Soc., 120: 10947-10952.
http://dx.doi.org/10.1021/ja981686m \\
+ \\
+    $F\_{R_2}$: \\
+        Fushman et al. (1998) Direct measurement of $^{15}$N chemical
shift anisotropy in solution. J. Am. Chem. Soc., 120: 10947-10952.
http://dx.doi.org/10.1021/ja981686m \\
   \\
  A study where consistency tests were used: \\
   \\
-    Morin \& Gagne (2009) NMR dynamics of PSE-4 beta-lactamase: An
interplay of ps-ns order and us-ms motions in the active site. Biophys. 
J.,
96: 4681-4691. http://dx.doi.org/10.1016/j.bpj.2009.02.068  \\
+    Morin \& Gagne (2009) NMR dynamics of PSE-4 $\beta$-lactamase: An
interplay of ps-ns order and $\mu$s-ms motions in the active site. 
Biophys.
J., 96: 4681-4691. http://dx.doi.org/10.1016/j.bpj.2009.02.068  \\
  """ \\
   \\
  \# Create the run. \\


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--
Sébastien Morin, Ph.D.
Postdoctoral Fellow, S. Bernèche Laboratory
Department of Bioinformatics
Biozentrum, Universität Basel
Klingelbergstrasse 50/70
4056 Basel
Switzerland
---- sebastien DOT morin AT unibas DOT ch ----




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