URL: <http://gna.org/bugs/?20469> Summary: Failure in reading X-ray PDB files using the ScientificPython parser. Project: relax Submitted by: bugman Submitted on: Fri 01 Feb 2013 10:53:32 AM GMT Category: relax's source code Severity: 2 - Minor Priority: 3 - Low Status: None Privacy: Public Assigned to: bugman Originator Name: Originator Email: Open/Closed: Open Discussion Lock: Any Release: 2.2.0 Operating System: All systems _______________________________________________________ Details: The presence of PDB crystallographic unit cell records triggers the following bug: Scientific Python PDB parser. Traceback (most recent call last): File "test_suite/system_tests/structure.py", line 63, in test_bug_sr_2998_broken_conect_records self.interpreter.structure.read_pdb('1RTE_trunc.pdb', dir=path, parser='scientific') File "prompt/uf_objects.py", line 219, in __call__ self._backend(*new_args, **uf_kargs) File "generic_fns/structure/main.py", line 504, in read_pdb cdp.structure.load_pdb(file_path, read_mol=read_mol, set_mol_name=set_mol_name, read_model=read_model, set_model_num=set_model_num, verbosity=verbosity) File "generic_fns/structure/scientific.py", line 602, in load_pdb model = PDB.Structure(file_path, model_num) File "extern/scientific_python/IO/PDB.py", line 1160, in __init__ self.parseFile(PDBFile(file_or_filename)) File "extern/scientific_python/IO/PDB.py", line 1381, in parseFile from extern.scientific_python.Geometry.Transformation \ ImportError: No module named Transformation _______________________________________________________ Reply to this item at: <http://gna.org/bugs/?20469> _______________________________________________ Message sent via/by Gna! http://gna.org/