[bug #21032] running relax disp branch, undefined symbol clapack-sgesv in scipy linalg. -- August 17, 2013 - 23:19

URL:
  <http://gna.org/bugs/?21032>

                 Summary: running relax disp branch, undefined symbol
clapack-sgesv in scipy linalg.
                 Project: relax
            Submitted by: tlinnet
            Submitted on: Sat 17 Aug 2013 09:19:34 PM GMT
                Category: relax's source code
                Severity: 3 - Normal
                Priority: 5 - Normal
                  Status: None
                 Privacy: Public
             Assigned to: None
         Originator Name: 
        Originator Email: 
             Open/Closed: Open
         Discussion Lock: Any
                 Release: Branches
        Operating System: GNU/Linux

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Details:

Hi.

I tried the test suite for
relax 3.0.0 - Runs fine
relax trunk -  Runs fine
relax disp - Error

For the relax disp branch, I get a module import error.
It relates to undefined symbol clapack-sgesv.

It is probably a error package.
Here is the error I get when running the test-suite

[tlinnet@haddock ~/relax_results]$ relax_disp --test-suite -l
system-tests_disp.log
Traceback (most recent call last):
  File "/sbinlab2/software/bin/relax_disp", line 9, in <module>
    import relax
  File "/sbinlab2/software/NMR-relax/relax_disp/relax.py", line 66, in
<module>
    user_functions.initialise()
  File "/sbinlab2/software/NMR-relax/relax_disp/user_functions/__init__.py",
line 95, in initialise
    import user_functions.consistency_tests
  File
"/sbinlab2/software/NMR-relax/relax_disp/user_functions/consistency_tests.py",
line 29, in <module>
    from specific_analyses.setup import consistency_tests_obj
  File "/sbinlab2/software/NMR-relax/relax_disp/specific_analyses/setup.py",
line 35, in <module>
    from specific_analyses.relax_disp.api import Relax_disp
  File
"/sbinlab2/software/NMR-relax/relax_disp/specific_analyses/relax_disp/api.py",
line 52, in <module>
    from target_functions.relax_disp import Dispersion
  File
"/sbinlab2/software/NMR-relax/relax_disp/target_functions/relax_disp.py", line
37, in <module>
    from lib.dispersion.ns_2site_3d import r2eff_ns_2site_3D
  File
"/sbinlab2/software/NMR-relax/relax_disp/lib/dispersion/ns_2site_3d.py", line
40, in <module>
    from scipy.linalg import expm
  File "/usr/lib64/python2.6/site-packages/scipy/linalg/__init__.py", line 8,
in <module>
    from basic import *
  File "/usr/lib64/python2.6/site-packages/scipy/linalg/basic.py", line 17, in
<module>
    from lapack import get_lapack_funcs
  File "/usr/lib64/python2.6/site-packages/scipy/linalg/lapack.py", line 18,
in <module>
    from scipy.linalg import clapack
ImportError: /usr/lib64/python2.6/site-packages/scipy/linalg/clapack.so:
undefined symbol: clapack_sgesv

------------
I cannot not even start relax_disp

[tlinnet@haddock ~/relax_results]$ relax_disp
Traceback (most recent call last):
  File "/sbinlab2/software/bin/relax_disp", line 9, in <module>
    import relax
  File "/sbinlab2/software/NMR-relax/relax_disp/relax.py", line 66, in
<module>
    user_functions.initialise()
  File "/sbinlab2/software/NMR-relax/relax_disp/user_functions/__init__.py",
line 95, in initialise
    import user_functions.consistency_tests
  File
"/sbinlab2/software/NMR-relax/relax_disp/user_functions/consistency_tests.py",
line 29, in <module>
    from specific_analyses.setup import consistency_tests_obj
  File "/sbinlab2/software/NMR-relax/relax_disp/specific_analyses/setup.py",
line 35, in <module>
    from specific_analyses.relax_disp.api import Relax_disp
  File
"/sbinlab2/software/NMR-relax/relax_disp/specific_analyses/relax_disp/api.py",
line 52, in <module>
    from target_functions.relax_disp import Dispersion
  File
"/sbinlab2/software/NMR-relax/relax_disp/target_functions/relax_disp.py", line
37, in <module>
    from lib.dispersion.ns_2site_3d import r2eff_ns_2site_3D
  File
"/sbinlab2/software/NMR-relax/relax_disp/lib/dispersion/ns_2site_3d.py", line
40, in <module>
    from scipy.linalg import expm
  File "/usr/lib64/python2.6/site-packages/scipy/linalg/__init__.py", line 8,
in <module>
    from basic import *
  File "/usr/lib64/python2.6/site-packages/scipy/linalg/basic.py", line 17, in
<module>
    from lapack import get_lapack_funcs
  File "/usr/lib64/python2.6/site-packages/scipy/linalg/lapack.py", line 18,
in <module>
    from scipy.linalg import clapack
ImportError: /usr/lib64/python2.6/site-packages/scipy/linalg/clapack.so:
undefined symbol: clapack_sgesv





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