mail[bug #21079] RelaxError failure of the dauvergne_protocol auto-analysis when the "local tm" global model is selected.


Others Months | Index by Date | Thread Index
>>   [Date Prev] [Date Next] [Thread Prev] [Thread Next]

Header


Content

Posted by Edward d Auvergne on August 29, 2013 - 10:10:
URL:
  <http://gna.org/bugs/?21079>

                 Summary: RelaxError failure of the dauvergne_protocol
auto-analysis when the "local tm" global model is selected.
                 Project: relax
            Submitted by: bugman
            Submitted on: Thu 29 Aug 2013 08:10:57 AM GMT
                Category: relax's source code
                Severity: 2 - Minor
                Priority: 3 - Low
                  Status: In Progress
                 Privacy: Public
             Assigned to: bugman
         Originator Name: 
        Originator Email: 
             Open/Closed: Open
         Discussion Lock: Any
                 Release: Repository: trunk
        Operating System: All systems

    _______________________________________________________

Details:

This bug has been mentioned twice in the relax-users mailing list:

http://thread.gmane.org/gmane.science.nmr.relax.user/1295
http://thread.gmane.org/gmane.science.nmr.relax.user/1518

However no bug report has been submitted.  Hence the problem could never be
fixed due to a severe lack of information.  This is the bug report for both
instances.

Running relax with the debug flag 'relax -d' would result in a much better
indication to what the problem really is.  And attaching a relax state file
saved just before the error message - or the results files for each global
diffusion model loaded prior to the error - would be extremely helpful.

The last messages from Nicolas Doucet are:

relax> model_selection(method='AIC', modsel_pipe='final - mf (Sun Sep 16
17:10:51 2012)', bundle='mf (Sun Sep 16 17:10:51 2012)', pipes=['local_tm - mf
(Sun Sep 16 17:10:51 2012)', 'sphere - mf (Sun Sep 16 17:10:51 2012)',
'prolate - mf (Sun Sep 16 17:10:51 2012)', 'oblate - mf (Sun Sep 16 17:10:51
2012)', 'ellipsoid - mf (Sun Sep 16 17:10:51 2012)'])
AIC model selection.

Global model - all diffusion tensor parameters and spin specific model-free
parameters.
Data pipe            Num_params_(k)       Num_data_sets_(n)    Chi2           
     Criterion          
local_tm - mf (Sun Sep 16 17:10:51 2012) 240                  696             
    375395.80880         375875.80880       
sphere - mf (Sun Sep 16 17:10:51 2012) 160                  696               
  380497.43227         380817.43227       
prolate - mf (Sun Sep 16 17:10:51 2012) 164                  696              
   380806.43290         381134.43290       
oblate - mf (Sun Sep 16 17:10:51 2012) 168                  696               
  380546.69280         380882.69280       
ellipsoid - mf (Sun Sep 16 17:10:51 2012) 171                  696            
     380696.67633         381038.67633       
The model from the data pipe 'local_tm - mf (Sun Sep 16 17:10:51 2012)' has
been selected.

relax> monte_carlo.setup(number=500)

relax> monte_carlo.create_data(method='back_calc')
RelaxError: The specific model has not been selected or set up.




    _______________________________________________________

Reply to this item at:

  <http://gna.org/bugs/?21079>

_______________________________________________
  Message sent via/by Gna!
  http://gna.org/




Related Messages


Powered by MHonArc, Updated Fri Aug 30 08:40:06 2013