Re: Unit tests are dublicated ? -- February 19, 2014 - 15:58

And how do I run a single unit test?

If I do:
relax --time -s

I get the list of systemtest I can run. F. ex. :
relax --time -s Align_tensor.test_copy

But I can't do the same for unit tests?

This won't work, but run all the unit tests.
relax --time -u Test_api.test_hybrid_method_args

Best
Troels

--
Troels Emtekær Linnet

PhD student

Copenhagen University

SBiNLab, 3-0-41

Ole Maaloes Vej 5

2200 Copenhagen N

Tlf: +45 353-22083

Lync Tlf: +45 353-30195

2014-02-19 15:41 GMT+01:00 Troels Emtekær Linnet <telinnet@xxxxxxxxx>:

Hi Edward.

Runnning the unit tests, I get that some are dublicated?

 relax -u --time > test.txt

 grep '^\.' test.txt | awk '{print $5}' | sort | uniq -d

298 are dublicated

-----------------------------
Test_align_tensor.test_copy_fail.
Test_align_tensor.test_copy_pull.
Test_align_tensor.test_copy_push.
Test_align_tensor.test_delete.
Test_align_tensor.test_delete_fail_no_data.
Test_align_tensor.test_delete_fail_no_pipe.
Test_align_tensor.test_display.
Test_align_tensor.test_display_fail_no_data.
Test_align_tensor.test_display_fail_no_pipe.
Test_align_tensor.test_init.
Test_align_tensor.test_init_bad_angle_units.
Test_align_tensor.test_matrix_angles_identity.
Test_align_tensor.test_svd_identity.
Test_diffusion_tensor.test_copy_pull_ellipsoid.
Test_diffusion_tensor.test_copy_pull_sphere.
Test_diffusion_tensor.test_copy_pull_spheroid.
Test_diffusion_tensor.test_copy_push_ellipsoid.
Test_diffusion_tensor.test_copy_push_sphere.
Test_diffusion_tensor.test_copy_push_spheroid.
Test_diffusion_tensor.test_delete.
Test_diffusion_tensor.test_delete_fail_no_data.
Test_diffusion_tensor.test_delete_fail_no_pipe.
Test_diffusion_tensor.test_display_ellipsoid.
Test_diffusion_tensor.test_display_fail_no_data.
Test_diffusion_tensor.test_display_fail_no_pipe.
Test_diffusion_tensor.test_display_sphere.
Test_diffusion_tensor.test_display_spheroid.
Test_diffusion_tensor.test_init_bad_angle_units.
Test_diffusion_tensor.test_init_ellipsoid.
Test_diffusion_tensor.test_init_sphere.
Test_diffusion_tensor.test_init_spheroid.
Test___init__.test___all__.
Test_molecule.test_copy_molecule_between_pipes.
Test_molecule.test_copy_molecule_between_pipes_fail_no_pipe.
Test_molecule.test_copy_molecule_within_pipe.
Test_molecule.test_copy_molecule_within_pipe_fail.
Test_molecule.test_create_molecule.
Test_molecule.test_create_molecule_fail.
Test_molecule.test_delete_molecule.
Test_molecule.test_delete_molecule_all.
Test_molecule.test_delete_molecule_fail.
Test_molecule.test_display_molecule.
Test_molecule.test_display_molecule_fail.
Test_molecule.test_name_molecule.
Test_molecule.test_name_molecule_fail.
Test_molecule.test_name_molecule_many_fail.
Test_relax_data.test_read.
Test_residue.test_copy_residue_between_molecules.
Test_residue.test_copy_residue_between_pipes.
Test_residue.test_copy_residue_between_pipes_fail_no_pipe.
Test_residue.test_copy_residue_within_molecule.
Test_residue.test_copy_residue_within_molecule_fail1.
Test_residue.test_copy_residue_within_molecule_fail2.
Test_residue.test_create_residue.
Test_residue.test_create_residue_fail.
Test_residue.test_delete_residue_all.
Test_residue.test_delete_residue_fail.
Test_residue.test_delete_residue_name.
Test_residue.test_delete_residue_num.
Test_residue.test_delete_residue_shift.
Test_residue.test_display_residue.
Test_residue.test_display_residue_fail.
Test_residue.test_name_residue.
Test_residue.test_name_residue_many.
Test_residue.test_name_residue_no_spin.
Test_residue.test_number_residue.
Test_residue.test_number_residue_many_fail.
Test_residue.test_number_residue_no_spin.
Test_sequence.test_copy_protein_sequence.
Test_sequence.test_display_protein_sequence.
Test_sequence.test_read_protein_noe_data.
Test_sequence.test_write_protein_sequence.
Test_spin.test_copy_spin.
Test_spin.test_copy_spin_between_molecules.
Test_spin.test_copy_spin_between_pipes.
Test_spin.test_copy_spin_between_pipes_fail.
Test_spin.test_copy_spin_between_residues.
Test_spin.test_copy_spin_fail1.
Test_spin.test_copy_spin_fail2.
Test_spin.test_copy_spin_fail3.
Test_spin.test_copy_spin_fail4.
Test_spin.test_create_pseudo_spin.
Test_spin.test_create_pseudo_spin2.
Test_spin.test_create_spin.
Test_spin.test_create_spin_fail.
Test_spin.test_delete_spin_all.
Test_spin.test_delete_spin_name.
Test_spin.test_delete_spin_num.
Test_spin.test_delete_spin_shift.
Test_spin.test_display_spin.
Test_spin.test_name_spin.
Test_spin.test_name_spin_many.
Test_spin.test_number_spin.
Test_spin.test_number_spin_many_fail.
Test_state.test_load.
Test_state.test_load_and_modify.
Test_state.test_load_and_reset.
Test_state.test_save.
Test_value.test_set_ct_all_spins_csa.
Test_value.test_set_ct_all_spins_diff_j0_f_eta_f_r2.
Test_value.test_set_ct_all_spins_f_eta.
Test_value.test_set_ct_all_spins_f_r2.
Test_value.test_set_ct_all_spins_j0.
Test_value.test_set_ct_all_spins_orientation.
Test_value.test_set_ct_all_spins_same_j0_f_eta_f_r2.
Test_value.test_set_ct_all_spins_tc.
Test_value.test_set_ct_defaults_csa.
Test_value.test_set_ct_defaults_f_eta.
Test_value.test_set_ct_defaults_f_r2.
Test_value.test_set_ct_defaults_j0.
Test_value.test_set_ct_defaults_j0_f_eta_f_r2.
Test_value.test_set_ct_defaults_orientation.
Test_value.test_set_ct_defaults_tc.
Test_value.test_set_ct_single_spin_csa.
Test_value.test_set_ct_single_spin_diff_j0_f_eta_f_r2.
Test_value.test_set_ct_single_spin_f_eta.
Test_value.test_set_ct_single_spin_f_r2.
Test_value.test_set_ct_single_spin_j0.
Test_value.test_set_ct_single_spin_orientation.
Test_value.test_set_ct_single_spin_same_j0_f_eta_f_r2.
Test_value.test_set_ct_single_spin_tc.
Test_value.test_set_jw_all_spins_csa.
Test_value.test_set_jw_all_spins_diff_j0_jwx_jwh.
Test_value.test_set_jw_all_spins_j0.
Test_value.test_set_jw_all_spins_jwh.
Test_value.test_set_jw_all_spins_jwx.
Test_value.test_set_jw_all_spins_same_j0_jwx_jwh.
Test_value.test_set_jw_defaults_csa.
Test_value.test_set_jw_defaults_j0.
Test_value.test_set_jw_defaults_j0_jwx_jwh.
Test_value.test_set_jw_defaults_jwh.
Test_value.test_set_jw_defaults_jwx.
Test_value.test_set_jw_single_spin_csa.
Test_value.test_set_jw_single_spin_diff_j0_jwx_jwh.
Test_value.test_set_jw_single_spin_j0.
Test_value.test_set_jw_single_spin_jwh.
Test_value.test_set_jw_single_spin_jwx.
Test_value.test_set_jw_single_spin_same_j0_jwx_jwh.
Test_value.test_set_mf_all_spins_csa.
Test_value.test_set_mf_all_spins_diff_s2f_s2s.
Test_value.test_set_mf_all_spins_local_tm.
Test_value.test_set_mf_all_spins_rex.
Test_value.test_set_mf_all_spins_s2.
Test_value.test_set_mf_all_spins_s2f.
Test_value.test_set_mf_all_spins_s2s.
Test_value.test_set_mf_all_spins_same_s2f_s2s.
Test_value.test_set_mf_all_spins_te.
Test_value.test_set_mf_all_spins_tf.
Test_value.test_set_mf_all_spins_ts.
Test_value.test_set_mf_defaults_csa.
Test_value.test_set_mf_defaults_local_tm.
Test_value.test_set_mf_defaults_rex.
Test_value.test_set_mf_defaults_s2.
Test_value.test_set_mf_defaults_s2f.
Test_value.test_set_mf_defaults_s2f_s2s.
Test_value.test_set_mf_defaults_s2s.
Test_value.test_set_mf_defaults_te.
Test_value.test_set_mf_defaults_tf.
Test_value.test_set_mf_defaults_ts.
Test_value.test_set_mf_diff_ellipsoid_default_alpha.
Test_value.test_set_mf_diff_ellipsoid_default_beta.
Test_value.test_set_mf_diff_ellipsoid_default_Da.
Test_value.test_set_mf_diff_ellipsoid_default_diff_tm_Da_Dr.
Test_value.test_set_mf_diff_ellipsoid_default_Diso.
Test_value.test_set_mf_diff_ellipsoid_default_Diso_Da_Dr.
Test_value.test_set_mf_diff_ellipsoid_default_Dpar.
Test_value.test_set_mf_diff_ellipsoid_default_Dper.
Test_value.test_set_mf_diff_ellipsoid_default_Dr.
Test_value.test_set_mf_diff_ellipsoid_default_Dratio.
Test_value.test_set_mf_diff_ellipsoid_default_Dx.
Test_value.test_set_mf_diff_ellipsoid_default_Dx_Dy_Dz.
Test_value.test_set_mf_diff_ellipsoid_default_Dy.
Test_value.test_set_mf_diff_ellipsoid_default_Dz.
Test_value.test_set_mf_diff_ellipsoid_default_gamma.
Test_value.test_set_mf_diff_ellipsoid_default_phi.
Test_value.test_set_mf_diff_ellipsoid_default_theta.
Test_value.test_set_mf_diff_ellipsoid_default_tm.
Test_value.test_set_mf_diff_ellipsoid_default_tm_Diso_Dr.
Test_value.test_set_mf_diff_ellipsoid_set_alpha.
Test_value.test_set_mf_diff_ellipsoid_set_beta.
Test_value.test_set_mf_diff_ellipsoid_set_Da.
Test_value.test_set_mf_diff_ellipsoid_set_diff_Diso_Da_Dr.
Test_value.test_set_mf_diff_ellipsoid_set_diff_Dx_Dy_Dz.
Test_value.test_set_mf_diff_ellipsoid_set_diff_tm_Da_Dr.
Test_value.test_set_mf_diff_ellipsoid_set_diff_tm_Diso_Dr.
Test_value.test_set_mf_diff_ellipsoid_set_Diso.
Test_value.test_set_mf_diff_ellipsoid_set_Dpar.
Test_value.test_set_mf_diff_ellipsoid_set_Dper.
Test_value.test_set_mf_diff_ellipsoid_set_Dr.
Test_value.test_set_mf_diff_ellipsoid_set_Dratio.
Test_value.test_set_mf_diff_ellipsoid_set_Dx.
Test_value.test_set_mf_diff_ellipsoid_set_Dy.
Test_value.test_set_mf_diff_ellipsoid_set_Dz.
Test_value.test_set_mf_diff_ellipsoid_set_gamma.
Test_value.test_set_mf_diff_ellipsoid_set_phi.
Test_value.test_set_mf_diff_ellipsoid_set_same_Dx_Dy_Dz.
Test_value.test_set_mf_diff_ellipsoid_set_theta.
Test_value.test_set_mf_diff_ellipsoid_set_tm.
Test_value.test_set_mf_diff_sphere_default_alpha.
Test_value.test_set_mf_diff_sphere_default_beta.
Test_value.test_set_mf_diff_sphere_default_Da.
Test_value.test_set_mf_diff_sphere_default_Diso.
Test_value.test_set_mf_diff_sphere_default_Dpar.
Test_value.test_set_mf_diff_sphere_default_Dper.
Test_value.test_set_mf_diff_sphere_default_Dr.
Test_value.test_set_mf_diff_sphere_default_Dratio.
Test_value.test_set_mf_diff_sphere_default_Dx.
Test_value.test_set_mf_diff_sphere_default_Dy.
Test_value.test_set_mf_diff_sphere_default_Dz.
Test_value.test_set_mf_diff_sphere_default_gamma.
Test_value.test_set_mf_diff_sphere_default_phi.
Test_value.test_set_mf_diff_sphere_default_theta.
Test_value.test_set_mf_diff_sphere_default_tm.
Test_value.test_set_mf_diff_sphere_set_alpha.
Test_value.test_set_mf_diff_sphere_set_beta.
Test_value.test_set_mf_diff_sphere_set_Da.
Test_value.test_set_mf_diff_sphere_set_Diso.
Test_value.test_set_mf_diff_sphere_set_Dpar.
Test_value.test_set_mf_diff_sphere_set_Dper.
Test_value.test_set_mf_diff_sphere_set_Dr.
Test_value.test_set_mf_diff_sphere_set_Dratio.
Test_value.test_set_mf_diff_sphere_set_Dx.
Test_value.test_set_mf_diff_sphere_set_Dy.
Test_value.test_set_mf_diff_sphere_set_Dz.
Test_value.test_set_mf_diff_sphere_set_gamma.
Test_value.test_set_mf_diff_sphere_set_phi.
Test_value.test_set_mf_diff_sphere_set_theta.
Test_value.test_set_mf_diff_sphere_set_tm.
Test_value.test_set_mf_diff_spheroid_default_alpha.
Test_value.test_set_mf_diff_spheroid_default_beta.
Test_value.test_set_mf_diff_spheroid_default_Da.
Test_value.test_set_mf_diff_spheroid_default_Diso.
Test_value.test_set_mf_diff_spheroid_default_Diso_Da.
Test_value.test_set_mf_diff_spheroid_default_Diso_Dratio.
Test_value.test_set_mf_diff_spheroid_default_Dpar.
Test_value.test_set_mf_diff_spheroid_default_Dpar_Dper.
Test_value.test_set_mf_diff_spheroid_default_Dpar_Dratio.
Test_value.test_set_mf_diff_spheroid_default_Dper.
Test_value.test_set_mf_diff_spheroid_default_Dper_Dpar.
Test_value.test_set_mf_diff_spheroid_default_Dr.
Test_value.test_set_mf_diff_spheroid_default_Dratio.
Test_value.test_set_mf_diff_spheroid_default_Dx.
Test_value.test_set_mf_diff_spheroid_default_Dy.
Test_value.test_set_mf_diff_spheroid_default_Dz.
Test_value.test_set_mf_diff_spheroid_default_gamma.
Test_value.test_set_mf_diff_spheroid_default_phi.
Test_value.test_set_mf_diff_spheroid_default_theta.
Test_value.test_set_mf_diff_spheroid_default_tm.
Test_value.test_set_mf_diff_spheroid_default_tm_Da.
Test_value.test_set_mf_diff_spheroid_default_tm_Dratio.
Test_value.test_set_mf_diff_spheroid_set_alpha.
Test_value.test_set_mf_diff_spheroid_set_beta.
Test_value.test_set_mf_diff_spheroid_set_Da.
Test_value.test_set_mf_diff_spheroid_set_diff_Diso_Da.
Test_value.test_set_mf_diff_spheroid_set_diff_Diso_Dratio.
Test_value.test_set_mf_diff_spheroid_set_diff_Dpar_Dper.
Test_value.test_set_mf_diff_spheroid_set_diff_Dpar_Dratio.
Test_value.test_set_mf_diff_spheroid_set_diff_Dper_Dpar.
Test_value.test_set_mf_diff_spheroid_set_diff_tm_Da.
Test_value.test_set_mf_diff_spheroid_set_diff_tm_Dratio.
Test_value.test_set_mf_diff_spheroid_set_Diso.
Test_value.test_set_mf_diff_spheroid_set_Dpar.
Test_value.test_set_mf_diff_spheroid_set_Dper.
Test_value.test_set_mf_diff_spheroid_set_Dr.
Test_value.test_set_mf_diff_spheroid_set_Dratio.
Test_value.test_set_mf_diff_spheroid_set_Dx.
Test_value.test_set_mf_diff_spheroid_set_Dy.
Test_value.test_set_mf_diff_spheroid_set_Dz.
Test_value.test_set_mf_diff_spheroid_set_gamma.
Test_value.test_set_mf_diff_spheroid_set_phi.
Test_value.test_set_mf_diff_spheroid_set_theta.
Test_value.test_set_mf_diff_spheroid_set_tm.
Test_value.test_set_mf_single_spin_csa.
Test_value.test_set_mf_single_spin_diff_s2f_s2s.
Test_value.test_set_mf_single_spin_local_tm.
Test_value.test_set_mf_single_spin_rex.
Test_value.test_set_mf_single_spin_s2.
Test_value.test_set_mf_single_spin_s2f.
Test_value.test_set_mf_single_spin_s2s.
Test_value.test_set_mf_single_spin_same_s2f_s2s.
Test_value.test_set_mf_single_spin_te.
Test_value.test_set_mf_single_spin_tf.
Test_value.test_set_mf_single_spin_ts.
Test_value.test_set_n_state_model_rx.
Test_value.test_set_relax_fit_all_spins_diff_i0_iinf.
Test_value.test_set_relax_fit_all_spins_i0.
Test_value.test_set_relax_fit_all_spins_iinf.
Test_value.test_set_relax_fit_all_spins_rx.
Test_value.test_set_relax_fit_all_spins_same_i0_iinf.
Test_value.test_set_relax_fit_defaults_i0.
Test_value.test_set_relax_fit_defaults_i0_iinf.
Test_value.test_set_relax_fit_defaults_iinf.
Test_value.test_set_relax_fit_defaults_rx.
Test_value.test_set_relax_fit_single_spin_diff_i0_iinf.
Test_value.test_set_relax_fit_single_spin_i0.
Test_value.test_set_relax_fit_single_spin_iinf.
Test_value.test_set_relax_fit_single_spin_rx.
Test_value.test_set_relax_fit_single_spin_same_i0_iinf.

--
Troels Emtekær Linnet

PhD student

Copenhagen University

SBiNLab, 3-0-41

Ole Maaloes Vej 5

2200 Copenhagen N

Tlf: +45 353-22083

Lync Tlf: +45 353-30195