Re: [sr #3142] Error messages Relax-3.1.7 -- April 23, 2014 - 10:25

Hi Edward,

Thank you very much for your suggestions. Should I separate the the  
questions about test suite and cmpg_analysis.py and resubmit them ?  
For the cpmy_analysis.py, I have change it to  
'..\..\test_suite\shared_data\dispersion\Hansen' as your suggestion,  
and try to run the script again, but there are following relaxerror,

relax> spectrum.read_intensities(file='500_MHz\\reference.in_sparky',  
dir='..\\..\test_suite\\shared_data\\dispersion\\Hansen',  
spectrum_id='500_reference.in', dim=1, int_method='height',  
int_col=None, spin_id_col=None, mol_name_col=None, res_num_col=None,  
res_name_col=None, spin_num_col=None, spin_name_col=None, sep=None,  
spin_id=None, ncproc=None)
RelaxError: The sequence data does not exist.

Thank you.

Best regards,

Mengjun



Quoting Edward d'Auvergne <edward@xxxxxxxxxxxxx>:

> Hi Mengjun,
>
> I have fixed the test suite problem.  This was simply a lower
> precision issue on MS Windows combined with hard-coded checks of
> optimised parameter values.  It will have no effect on any analysis
> you preform.  To obtain the fix, which you do not need, you will need
> to wait until I release relax 3.2.0.
>
> As for the second problem, I only just noticed it today.  It is better
> to keep things separate.  So the test suite problem could have been
> reported to the relax bug tracker
> (http://gna.org/bugs/?func=additem&group=relax) and the script usage
> problem to the relax-users mailing list.  The fix for the script is
> that the path '../../test_suite/shared_data/dispersion/Hansen' is used
> in the script.  This is incorrect as these are the Linux/Unix path
> separators.  In Windows, you would need to change this to
> '..\..\test_suite\shared_data\dispersion\Hansen'.  I will change the
> script so that it is compatible with all operating systems (again this
> will appear in relax 3.2.0).
>
> Cheers,
>
> Edward
>
>
>
> On 3 April 2014 21:30, anonymous <NO-REPLY.INVALID-ADDRESS@xxxxxxx> wrote:
> > URL:
> >   <http://gna.org/support/?3142>
> >
> >                  Summary: Error messages Relax-3.1.7
> >                  Project: relax
> >             Submitted by: None
> >             Submitted on: Thu 03 Apr 2014 07:30:07 PM UTC
> >                 Category: Feature request
> >                 Priority: 5 - Normal
> >                 Severity: 3 - Normal
> >                   Status: None
> >              Assigned to: None
> >         Originator Email: mengjun.xue@xxxxxxxxxxxxxxxxxxxx
> >              Open/Closed: Open
> >          Discussion Lock: Any
> >         Operating System: Microsoft Windows
> >
> >     _______________________________________________________
> >
> > Details:
> >
> > Hi Edward,
> >
> > I am trying the new version relax-3.1.7, the full test suite failed on my
> > computer.
> > System/functional tests
> > ................................................................. [ Failed ]
> > Unit tests
> > ..................................................................................
> > [ OK ]
> > GUI tests
> > ...................................................................................
> > [ OK ]
> > Synopsis
> > ................................................................................
> > [ Failed ]
> >
> > For relaxation dispersion, I am trying the script cpmg_analysis.py  
> > for testing
> > in the folder of sample_scripts, error messgage came up,
> >
> > RelaxError: The file
> > '../../test_suite/shared_data/dispersion/Hansen\\fake_sequence.in' does not
> > exist. But the fake_sequence.in is indeed in the folder of Hansen.
> >
> > Could you please give me some suggestions about the problems?  
> > Please find the
> > attached log files for full test suite and cpmg_analysis.py.
> >
> > Thank you so much.
> >
> > Best regards,
> >
> > Mengjun
> >
> >
> >
> >
> >     _______________________________________________________
> >
> > File Attachments:
> >
> >
> > -------------------------------------------------------
> > Date: Thu 03 Apr 2014 07:30:07 PM UTC  Name: log_cpmg_analysis_1  Size: 11kB
> > By: None
> >
> > <http://gna.org/support/download.php?file_id=20467>
> > -------------------------------------------------------
> > Date: Thu 03 Apr 2014 07:30:07 PM UTC  Name: log_full_test_suite.txt  Size:
> > 113kB   By: None
> >
> > <http://gna.org/support/download.php?file_id=20468>
> >
> >     _______________________________________________________
> >
> > Reply to this item at:
> >
> >   <http://gna.org/support/?3142>
> >
> > _______________________________________________
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> >   http://gna.org/
> >
> >
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