Re: [bug #21959] cpmg_analysis -- April 24, 2014 - 17:23

Hi Edward,

When I run relax -i --tee log, I rename log to log123 or loglog, which  
is new name, it should not be problem. For the permisions for the  
directory, I can get the log file when I run other script, for  
example, I have run dauvergne_protocol.py for the full model free  
analysis on my computer, it can create log file, dauvergne_protocol.py  
can run smoothly, but when I try to run cpmg_analysis.py, it does not  
work. So maybe my computer has some problems, I will ask some people  
to check my computer, at this moment it seems my computer can still  
work well, it can run relax scripts, dauvergne_protocol.py can run  
smoothly, but it can not run cpmg_analysis.py, if it is hard disk  
failture, it means the computer will have some strange noise? and can  
not start windows system easily?

Thank you.

Best regards,

Mengjun


Quoting Edward d'Auvergne <edward@xxxxxxxxxxxxx>:

> Hi,
>
> If the 'relax -i --tee log' command does not produce a 'log' file on
> your computer, then that indicates where the problem is.  There are
> only two cases where this file cannot be produced:
>
>   - The 'log' file already exists.  The old file would therefore have
> to be deleted, or run 'relax -i --tee log2'.
>
>   - You do not have write permissions for the directory you are
> running the 'relax -i --tee log' command from.
>
> If it is not one of these two cases, then there is something seriously
> sick with your computer!   For example your computer could be
> currently suffering from a progressive hard disk failure.  In any
> case, this is not a problem due to relax but a general problem with
> your computer.  Do you have a system administrator at work who can
> look at this?
>
> Regards,
>
> Edward
>
>
>
> On 24 April 2014 16:42,  <mengjun.xue@xxxxxxxxxxxxxxxxxxxx> wrote:
> > Hi Edward,
> >
> > I have tried the 'relax -i --tee log' command, but it does not create log
> > file on my computer, I just copy the output from cmd window using editor
> > mode:
> >
> >
> >
> >                                   relax 3.1.7
> >
> >                     Molecular dynamics by NMR data analysis
> >
> >                    Copyright (C) 2001-2006 Edward d'Auvergne
> >               Copyright (C) 2006-2014 the relax development team
> >
> > This is free software which you are welcome to modify and redistribute under
> > the conditions of the GNU General Public License (GPL).  This program,
> > including all modules, is licensed under the GPL and comes with absolutely
> > no
> > warranty.  For details type 'GPL' within the relax prompt.
> >
> > Assistance in using the relax prompt and scripting interface can be accessed
> > by
> > typing 'help' within the prompt.
> >
> > Processor fabric:  Uni-processor.
> >
> >
> > Hardware information:
> >     Machine:                 x86
> >     Processor:               x86 Family 6 Model 15 Stepping 13, GenuineIntel
> >     Processor name:          x86 Family 6 Model 15 Stepping 13, GenuineIntel
> >     Endianness:              little
> >     Total RAM size:          3037.30078125 Mb
> >     Total swap size:         2047.875 Mb
> >
> > Operating system information:
> >     System:                  Windows
> >     Release:                 7
> >     Version:                 6.1.7601
> >     Win32 version:           7 6.1.7601 SP1 Multiprocessor Free
> >     Distribution:
> >     Full platform string:    Windows-7-6.1.7601-SP1
> >     Windows architecture:    x86
> >
> > Python information:
> >     Architecture:            32bit WindowsPE
> >     Python version:          2.7.6
> >     Python branch:
> >     Python build:            default, Nov 10 2013 19:24:18
> >     Python compiler:         MSC v.1500 32 bit (Intel)
> >     Libc version:
> >     Python implementation:   CPython
> >     Python revision:
> >     Python executable:       C:\Python27\python.exe
> >     Python flags:            sys.flags(debug=0, py3k_warning=0,
> > division_warning
> > =0, division_new=0, inspect=0, interactive=0, optimize=0,
> > dont_write_bytecode=0,
> >  no_user_site=0, no_site=0, ignore_environment=0, tabcheck=0, verbose=0,
> > unicode
> > =0, bytes_warning=0, hash_randomization=0)
> >     Python float info:       sys.float_info(max=1.7976931348623157e+308,
> > max_exp
> > =1024, max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021,
> > min_10_exp=-3
> > 07, dig=15, mant_dig=53, epsilon=2.220446049250313e-16, radix=2, rounds=1)
> >     Python module path:      ['', 'C:\\relax-3.1.7',
> > 'C:\\Windows\\system32\\pyt
> > hon27.zip', 'C:\\Python27\\DLLs', 'C:\\Python27\\lib',
> > 'C:\\Python27\\lib\\plat-
> > win', 'C:\\Python27\\lib\\lib-tk', 'C:\\Python27',
> > 'C:\\Python27\\lib\\site-pack
> > ages', 'C:\\Python27\\lib\\site-packages\\wx-3.0-msw']
> >
> > Python packages and modules (most are optional):
> >
> > Name               Installed    Version                  Path
> >
> > minfx              True         1.0.5
> > C:\relax-3.1.7\minfx
> >
> > bmrblib            True         1.0.3
> > C:\relax-3.1.7\bmrblib
> >
> > numpy              True         1.8.0
> > C:\Python27\lib\site-pa
> > ckages\numpy
> > scipy              True         0.13.3
> > C:\Python27\lib\site-pa
> > ckages\scipy
> > wxPython           True         3.0.0.0 msw (classic)
> > C:\Python27\lib\site-pa
> > ckages\wx-3.0-msw\wx
> > mpi4py             False
> >
> > epydoc             False
> >
> > optparse           True         1.5.3
> > C:\Python27\lib\optpars
> > e.pyc
> > readline           True
> > C:\Python27\lib\site-pa
> > ckages\readline.pyc
> > profile            True
> > C:\Python27\lib\profile
> > .pyc
> > bz2                True
> > C:\Python27\DLLs\bz2.py
> > d
> > gzip               True
> > C:\Python27\lib\gzip.py
> > c
> > io                 True
> > C:\Python27\lib\io.pyc
> >
> > xml                True         0.8.4 (internal)
> > C:\Python27\lib\xml\__i
> > nit__.pyc
> > xml.dom.minidom    True
> > C:\Python27\lib\xml\dom
> > \minidom.pyc
> >
> > relax information:
> >     Version:                 3.1.7
> >     Processor fabric:        Uni-processor.
> >
> > relax C modules:
> >
> > Module                        Compiled    File type    Path
> >
> > target_functions.relax_fit    True
> > target_functions\relax_fi
> > t.pyd
> >
> >
> > Thank you.
> >
> > Best regards,
> >
> > Mengjun
> >
> >
> >
> > Quoting Edward d'Auvergne <edward@xxxxxxxxxxxxx>:
> >
> > > Hi,
> > >
> > > The command is correct, running 'relax -i --tee log' will produce the
> > > 'log' text file which you can then open and copy and paste the
> > > contents of.
> > >
> > > Regards,
> > >
> > > Edward