mail[bug #22012] dx.map not implemented for pipe type relax_disp


Others Months | Index by Date | Thread Index
>>   [Date Prev] [Date Next] [Thread Prev] [Thread Next]

Header


Content

Posted by Troels E. Linnet on May 05, 2014 - 01:15:
Follow-up Comment #3, bug #22012 (project relax):

dx.map(params=['dw', 'pA', 'kex'], map_type='Iso3D', spin_id=':1@N', inc=20,
lower=None, upper=None, axis_incs=5, file_prefix='map', dir=None, point=None,
point_file='point', remap=None)

Creating the OpenDX .net program file.
Opening the file 'map.net' for writing.

Creating the OpenDX .cfg program configuration file.
Opening the file 'map.cfg' for writing.

Creating the OpenDX .general file.
Opening the file 'map.general' for writing.

Creating the map.
Opening the file 'map' for writing.
Progress:    0.000%
RelaxWarning: invalid value encountered in double_scalars
debug> Execution lock:  Release by 'script UI' ('script' mode).
Traceback (most recent call last):
  File "/Users/tlinnet/software/relax_trunk/multi/processor.py", line 494, in
run
    self.callback.init_master(self)
  File "/Users/tlinnet/software/relax_trunk/multi/__init__.py", line 318, in
default_init_master
    self.master.run()
  File "/Users/tlinnet/software/relax_trunk/relax.py", line 194, in run
    self.interpreter.run(self.script_file)
  File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py", line 275,
in run
    return run_script(intro=self.__intro_string, local=locals(),
script_file=script_file, show_script=self.__show_script,
raise_relax_error=self.__raise_relax_error)
  File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py", line 569,
in run_script
    return console.interact(intro, local, script_file,
show_script=show_script, raise_relax_error=raise_relax_error)
  File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py", line 468,
in interact_script
    exec_script(script_file, local)
  File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py", line 347,
in exec_script
    runpy.run_module(module, globals)
  File
"/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/runpy.py",
line 180, in run_module
    fname, loader, pkg_name)
  File
"/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/runpy.py",
line 72, in _run_code
    exec code in run_globals
  File
"/Users/tlinnet/software/relax_trunk/test_suite/system_tests/scripts/relax_disp/cpmg_synthetic.py",
line 277, in <module>
    dx.map(params=['dw', 'pA', 'kex'], map_type='Iso3D', spin_id=":1@N",
inc=20, lower=None, upper=None, axis_incs=5, file_prefix='map', dir=ds.resdir,
point=None, point_file='point', remap=None)
  File "/Users/tlinnet/software/relax_trunk/prompt/uf_objects.py", line 221,
in __call__
    self._backend(*new_args, **uf_kargs)
  File "/Users/tlinnet/software/relax_trunk/pipe_control/opendx.py", line 88,
in map
    Map(params, spin_id, inc, lower, upper, axis_incs, file_prefix, dir,
point, point_file, remap)
  File "/Users/tlinnet/software/relax_trunk/pipe_control/opendx.py", line 184,
in __init__
    self.create_map()
  File "/Users/tlinnet/software/relax_trunk/pipe_control/opendx.py", line 197,
in create_map
    self.map_3D_text(map_file)
  File "/Users/tlinnet/software/relax_trunk/pipe_control/opendx.py", line 255,
in map_3D_text
    k, n, chi2 = self.model_statistics(spin_id=self.spin_id)
  File
"/Users/tlinnet/software/relax_trunk/specific_analyses/relax_disp/api.py",
line 683, in model_statistics
    spins = spin_ids_to_containers(spin_ids)
  File
"/Users/tlinnet/software/relax_trunk/specific_analyses/relax_disp/data.py",
line 3620, in spin_ids_to_containers
    for id in spin_ids:
TypeError: 'NoneType' object is not iterable


    _______________________________________________________

Reply to this item at:

  <http://gna.org/bugs/?22012>

_______________________________________________
  Message sent via/by Gna!
  http://gna.org/




Related Messages


Powered by MHonArc, Updated Mon May 05 02:00:09 2014