This commit did no go so well:
relax -s Relax_disp.test_hansen_cpmg_data_auto_analysis -d
model_selection(method='AIC', modsel_pipe='final - relax_disp',
bundle='relax_disp', pipes=['No Rex - relax_disp', 'LM63 -
relax_disp', 'CR72 - relax_disp', 'IT99 - relax_disp'])
AIC model selection.
The spin cluster [':4@N'].
debug> Lock 'pipe_lock': Acquisition by 'switch'.
debug> Lock 'pipe_lock': Release by 'switch'.
debug> Lock 'pipe_lock': Acquisition by 'switch'.
debug> Lock 'pipe_lock': Release by 'switch'.
debug> Execution lock: Release by 'relax_disp' ('auto-analysis' mode).
debug> Execution lock: Release by 'script UI' ('script' mode).
E
======================================================================
ERROR: test_hansen_cpmg_data_auto_analysis
(test_suite.system_tests.relax_disp.Relax_disp)
Test of the dispersion auto-analysis using Dr. Flemming Hansen's CPMG data.
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/Users/tlinnet/software/relax_trunk/test_suite/system_tests/relax_disp.py",
line 1256, in test_hansen_cpmg_data_auto_analysis
self.interpreter.run(script_file=status.install_path +
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'relax_disp'+sep+'hansen_data.py')
File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py",
line 275, in run
return run_script(intro=self.__intro_string, local=locals(),
script_file=script_file, show_script=self.__show_script,
raise_relax_error=self.__raise_relax_error)
File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py",
line 569, in run_script
return console.interact(intro, local, script_file,
show_script=show_script, raise_relax_error=raise_relax_error)
File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py",
line 468, in interact_script
exec_script(script_file, local)
File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py",
line 347, in exec_script
runpy.run_module(module, globals)
File
"/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/runpy.py",
line 180, in run_module
fname, loader, pkg_name)
File
"/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/runpy.py",
line 72, in _run_code
exec code in run_globals
File
"/Users/tlinnet/software/relax_trunk/test_suite/system_tests/scripts/relax_disp/hansen_data.py",
line 58, in <module>
Relax_disp(pipe_name=pipe_name, pipe_bundle=pipe_bundle,
results_dir=ds.tmpdir, models=MODELS, grid_inc=GRID_INC,
mc_sim_num=MC_NUM, numeric_only=ds.numeric_only)
File "/Users/tlinnet/software/relax_trunk/auto_analyses/relax_disp.py",
line 124, in __init__
self.run()
File "/Users/tlinnet/software/relax_trunk/auto_analyses/relax_disp.py",
line 502, in run
self.interpreter.model_selection(method=self.modsel,
modsel_pipe=self.name_pipe('final'), bundle=self.pipe_bundle,
pipes=self.model_pipes)
File "/Users/tlinnet/software/relax_trunk/prompt/uf_objects.py",
line 221, in __call__
self._backend(*new_args, **uf_kargs)
File
"/Users/tlinnet/software/relax_trunk/pipe_control/model_selection.py",
line 214, in select
k, n, chi2 = model_statistics[pipe](model_info,
global_stats=global_flag)
File
"/Users/tlinnet/software/relax_trunk/specific_analyses/relax_disp/api.py",
line 698, in model_statistics
k = param_num(spins=spins)
File
"/Users/tlinnet/software/relax_trunk/specific_analyses/relax_disp/parameters.py",
line 900, in param_num
raise RelaxError("The number of parameters for each spin in the
cluster are not the same.")
RelaxError: RelaxError: The number of parameters for each spin in the
cluster are not the same.
---------- Forwarded message ----------
From: <tlinnet@xxxxxxxxxxxxx>
Date: 2014-05-05 1:59 GMT+02:00
Subject: r22954 - /trunk/specific_analyses/relax_disp/api.py
To: relax-commits@xxxxxxx
Author: tlinnet
Date: Mon May 5 01:59:58 2014
New Revision: 22954
URL: http://svn.gna.org/viewcvs/relax?rev=22954&view=rev
Log:
Attempt to fix function model_statistics() in API for relax_disp.
bug #22012(https://gna.org/bugs/?22012): dx.map not implemented for
pipe type relax_disp.
Modified:
trunk/specific_analyses/relax_disp/api.py
Modified: trunk/specific_analyses/relax_disp/api.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/relax_disp/api.py?rev=22954&r1=22953&r2=22954&view=diff
==============================================================================
--- trunk/specific_analyses/relax_disp/api.py (original)
+++ trunk/specific_analyses/relax_disp/api.py Mon May 5 01:59:58 2014
@@ -678,9 +678,21 @@
@rtype: tuple of (int, int, float)
"""
+ # Bad argument combination.
+ if model_info == None and spin_id == None:
+ raise RelaxError("Either the model_info or spin_id
argument must be supplied.")
+ elif model_info != None and spin_id != None:
+ raise RelaxError("The model_info arg " + repr(model_info)
+ " and spin_id arg " + repr(spin_id) + " clash. Only one should be
supplied.")
+
# Unpack the data.
spin_ids = model_info
- spins = spin_ids_to_containers(spin_ids)
+ #spins = spin_ids_to_containers(spin_ids)
+
+ spins_list = []
+ for spin_id in self.model_loop():
+ spins_list.append(spin_id[0])
+
+ spins = spin_ids_to_containers(spins_list)
# The number of parameters for the cluster.
k = param_num(spins=spins)
_______________________________________________
relax (http://www.nmr-relax.com)
This is the relax-commits mailing list
relax-commits@xxxxxxx
To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-commits
_______________________________________________
relax (http://www.nmr-relax.com)
This is the relax-devel mailing list
relax-devel@xxxxxxx
To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-devel
Re: r22954 - /trunk/specific_analyses/relax_disp/api.py