URL:
<http://gna.org/bugs/?22091>
Summary: ERROR: test_opendx_s2_te_rex
(test_suite.gui_tests.model_free.Mf)
Project: relax
Submitted by: jwhowarth
Submitted on: Mon 26 May 2014 01:45:50 PM UTC
Category: Test suite
Specific analysis category: None
Priority: 5 - Normal
Severity: 3 - Normal
Status: None
Assigned to: None
Originator Name:
Originator Email:
Open/Closed: Open
Release: 3.2.1
Discussion Lock: Any
Operating System: Mac OS X (Intel)
_______________________________________________________
Details:
On x86_64-apple-darwin, the relax 3.2.1, built as a fink package against
python 2.7.6, scipy 0.14.0 and bumpy 1.18.1, produces the following failures
in the GUI tests…
% relax --test-suite
Echoing of user function calls has been enabled.
=============================
= System / functional tests =
=============================
............................................................................................................................................................................................................................................................................................................................................................................................
----------------------------------------------------------------------
Ran 380 tests in 1992.216s
OK
==============
= Unit tests =
==============
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
----------------------------------------------------------------------
Ran 1310 tests in 39.506s
OK
=============
= GUI tests =
=============
.
(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
monitor type
(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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.E
(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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..
(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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(python2.7:54684): Gtk-WARNING **: Unable to find default local directory
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..
======================================================================
ERROR: test_opendx_s2_te_rex (test_suite.gui_tests.model_free.Mf)
Mapping the {S2, te, Rex} chi2 space through the OpenDX user function
dx.map().
----------------------------------------------------------------------
relax>
sequence.read(file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/noe.500.out',
dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2,
spin_num_col=None, spin_name_col=None, sep=None, spin_id=None)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> spin.name(name='N', spin_id=None, force=False)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> spin.element(element='N', spin_id=None, force=False)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> spin.isotope(isotope='15N', spin_id='@N', force=False)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> relax_data.read(ri_id='R1_600', ri_type='R1', frq=600000000.0,
file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r1.600.out',
dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2,
spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None,
spin_id=None)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> relax_data.read(ri_id='R2_600', ri_type='R2', frq=600000000.0,
file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r2.600.out',
dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2,
spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None,
spin_id=None)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> relax_data.read(ri_id='NOE_600', ri_type='NOE', frq=600000000.0,
file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/noe.600.out',
dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2,
spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None,
spin_id=None)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> relax_data.read(ri_id='R1_500', ri_type='R1', frq=500000000.0,
file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r1.500.out',
dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2,
spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None,
spin_id=None)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> relax_data.read(ri_id='R2_500', ri_type='R2', frq=500000000.0,
file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r2.500.out',
dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2,
spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None,
spin_id=None)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> relax_data.read(ri_id='NOE_500', ri_type='NOE', frq=500000000.0,
file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/noe.500.out',
dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2,
spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None,
spin_id=None)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> diffusion_tensor.init(params=1e-08, time_scale=1.0, d_scale=1.0,
angle_units='deg', param_types=0, spheroid_type=None, fixed=True)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> sequence.attach_protons()
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> interatom.define(spin_id1='@N', spin_id2='@H', direct_bond=True,
pipe=None)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> interatom.set_dist(spin_id1='@N', spin_id2='@H', ave_dist=1.02e-10,
unit='meter')
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> value.set(val=-0.000172, param='csa', index=0, spin_id=None,
error=False)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
relax> model_free.select_model(model='m4', spin_id=None)
RelaxError: No data pipes currently exist. Please use the pipe.create user
function first.
Traceback (most recent call last):
File "/sw/lib/relax-py27/test_suite/gui_tests/model_free.py", line 528, in
test_opendx_s2_te_rex
self.script_exec(status.install_path +
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'model_free'+sep+'opendx_s2_te_rex.py')
File "/sw/lib/relax-py27/test_suite/gui_tests/base_classes.py", line 167, in
script_exec
exec_script(script, space)
File "/sw/lib/relax-py27/prompt/interpreter.py", line 347, in exec_script
runpy.run_module(module, globals)
File "/sw/lib/python2.7/runpy.py", line 180, in run_module
fname, loader, pkg_name)
File "/sw/lib/python2.7/runpy.py", line 72, in _run_code
exec code in run_globals
File
"/sw/lib/relax-py27/test_suite/system_tests/scripts/model_free/opendx_s2_te_rex.py",
line 45, in <module>
self._execute_uf(uf_name='dx.map', params=['s2', 'te', 'rex'],
spin_id=':2@N', inc=2, lower=[0.0, 0, 0], upper=[1.0, 10000e-12, 3.0 / (2.0 *
pi * 600000000.0)**2], point=[0.970, 2048.0e-12, 0.149 / (2.0 * pi *
600000000.0)**2], file_prefix='devnull', point_file='devnull')
File "/sw/lib/relax-py27/test_suite/gui_tests/base_classes.py", line 125, in
_execute_uf
uf(wx_wizard_run=False, **kargs)
File "/sw/lib/relax-py27/gui/uf_objects.py", line 201, in __call__
status = self.create_wizard(wx_parent)
File "/sw/lib/relax-py27/gui/uf_objects.py", line 293, in create_wizard
self.page = self.create_page(self.wizard, sync=self._sync)
File "/sw/lib/relax-py27/gui/uf_objects.py", line 272, in create_page
return Uf_page(self._name, parent=wizard, height_desc=self._height_desc,
sync=self._sync, execute=execute)
File "/sw/lib/relax-py27/gui/uf_objects.py", line 352, in __init__
super(Uf_page, self).__init__(parent, height_desc=height_desc)
File "/sw/lib/relax-py27/gui/wizards/wiz_objects.py", line 127, in __init__
self.add_contents(main_sizer)
File "/sw/lib/relax-py27/gui/uf_objects.py", line 617, in add_contents
raise RelaxError("The Python object type '%s' cannot be handled." %
arg['py_type'])
RelaxError: RelaxError: The Python object type 'list_val_or_list_of_list_val'
cannot be handled.
----------------------------------------------------------------------
Ran 71 tests in 384.680s
FAILED (errors=1)
===============================
= Software verification tests =
===============================
..
----------------------------------------------------------------------
Ran 2 tests in 3.701s
OK
===================================
= Summary of the relax test suite =
===================================
Optional packages/modules
=========================
No tests skipped due to missing modules.
Synopsis
========
System/functional tests
..................................................................... [ OK ]
Unit tests
..................................................................................
[ OK ]
GUI tests
...............................................................................
[ Failed ]
Software verification tests
................................................................. [ OK ]
Synopsis
................................................................................
[ Failed ]
_______________________________________________________
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<http://gna.org/bugs/?22091>
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[bug #22091] ERROR: test_opendx_s2_te_rex (test_suite.gui_tests.model_free.Mf)