mail[task #7793] Speed-up of dispersion models


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Posted by Troels E. Linnet on May 27, 2014 - 17:36:
Follow-up Comment #80, task #7793 (project relax):

Time comparison:

time relax_disp_speed --time -x -t log_disp_speed.log
1126.806u 2.061s 19:27.54 96.6% 0+0k 27640+74720io 0pf+0w

time relax_tomat --time -x -t log_trunk.log
1155.629u 1.926s 19:47.34 97.4% 0+0k 1360+75136io 0pf+0w

--------------------------------------------------

Fail in branch: disp_speed

1) Relax_disp.test_hansen_cpmg_data_missing_auto_analysis
********************************************************
relax> pipe.switch(pipe_name='CR72 - relax_disp')


Optimised parameters:

Parameter            Value (:4)           Value (:70)          Value (:71)    
    
R2 (500 MHz)             1.60457897669037     6.97254060301172    
4.98133811357496
R2 (800 MHz)             1.63223134786313     9.40988989591739   
0.032954577006056
pA                      0.857061841160828    0.989856764737156   
0.996612479921659
dw                   4.60016668228934e-05     5.60881174615364    
4.34737293174611
kex                    0.0796825345503101     1752.90081806196    
1935.65326283979
chi2                     26.7356660132779     53.8382094904676     
5.5170336847812

Traceback (most recent call last):
  File
"/sbinlab2/tlinnet/software/NMR-relax/disp_speed/test_suite/system_tests/relax_disp.py",
line 2053, in test_hansen_cpmg_data_missing_auto_analysis
    self.assertAlmostEqual(spin4.pA, 0.899911303159742, 3)
AssertionError: 0.8570618411608284 != 0.89991130315974199 within 3 places
********************************************************


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