Re: Error? WARNING: terminal is not fully functional -- July 02, 2014

I've now managed to replicate this problem on one test system.  It is
caused by the following two changes:

r24257 - http://article.gmane.org/gmane.science.nmr.relax.scm/22007
r24263 - http://article.gmane.org/gmane.science.nmr.relax.scm/22013

As these are not part of any relax release, no bug report is needed.
I'll fix this in trunk.

Cheers,

Edward






On 30 June 2014 09:48, Edward d'Auvergne <edward@xxxxxxxxxxxxx> wrote:

Hi,

This is very strange.  You can try and see if the help system for the
Python installed on that machine is functional.  Just run the same
Python as is running relax, and try help(dir) or something similar.
It seems to be a Python rather than relax issue, however it could be
that the special relax help system for the prompt UI is at fault.

Regards,

Edward



On 30 June 2014 09:42, Troels Emtekær Linnet <telinnet@xxxxxxxxx> wrote:

Hi Ed.

This happens when I try to access the help function.

relax> help(relax_disp)
WARNING: terminal is not fully functional
-  (press RETURN)

[tlinnet@haddock Troels_Relax_Point]$ relax_tomat -i



                                  relax repository checkout rNone
                                                None

                              Molecular dynamics by NMR data analysis

                             Copyright (C) 2001-2006 Edward d'Auvergne
                         Copyright (C) 2006-2014 the relax development team

This is free software which you are welcome to modify and redistribute
under the conditions of the
GNU General Public License (GPL).  This program, including all
modules, is licensed under the GPL
and comes with absolutely no warranty.  For details type 'GPL' within
the relax prompt.

Assistance in using the relax prompt and scripting interface can be
accessed by typing 'help' within
the prompt.

Processor fabric:  Uni-processor.


Hardware information:
    Machine:                 x86_64
    Processor:               x86_64
    Processor name:          Intel(R) Xeon(R) CPU           E5645  @ 
2.40GHz
    Endianness:              little
    Total RAM size:          24013 Mb
    Total swap size:         26191 Mb

Operating system information:
    System:                  Linux
    Release:                 2.6.32-431.5.1.el6.x86_64
    Version:                 #1 SMP Fri Jan 10 14:46:43 EST 2014
    GNU/Linux version:       Red Hat Enterprise Linux Server 6.5 Santiago
    Distribution:            redhat 6.5 Santiago
    Full platform string:
Linux-2.6.32-431.5.1.el6.x86_64-x86_64-with-redhat-6.5-Santiago

Python information:
    Architecture:            64bit ELF
    Python version:          2.6.6
    Python branch:           tags/r266
    Python build:            r266:84292, Nov 21 2013 10:50:32
    Python compiler:         GCC 4.4.7 20120313 (Red Hat 4.4.7-4)
    Libc version:            glibc 2.2.5
    Python implementation:   CPython
    Python revision:         84292
    Python executable:       /usr/bin/python
    Python flags:            sys.flags(debug=0, py3k_warning=0,
division_warning=0, division_new=0, inspect=0, interactive=0,
optimize=0, dont_write_bytecode=0, no_user_site=0, no_site=0,
ignore_environment=0, tabcheck=0, verbose=0, unicode=0,
bytes_warning=0, hash_randomization=0)
    Python float info:
sys.floatinfo(max=1.7976931348623157e+308, max_exp=1024,
max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021,
min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.2204460492503131e-16,
radix=2, rounds=1)
    Python module path:
['/sbinlab2/tlinnet/software/NMR-relax/disp_spin_speed',
'/sbinlab2/software/CCP4-Linux_6.3.0/ccp4-6.3.0/share/python',
'/sbinlab2/tlinnet/phd/estA/2014_06_30_Kaare_presentation_Novo/Tue_CPMG/20131228/Troels_Relax_Point',
'/sbinlab2/software/x64/haddock2.1',
'/sbinlab2/software/x64/lib64/python2.6/site-packages',
'/sbinlab2/software/x64/ccpnmr/ccpnmr2.3/python',
'/usr/lib64/python26.zip', '/usr/lib64/python2.6',
'/usr/lib64/python2.6/plat-linux2', '/usr/lib64/python2.6/lib-tk',
'/usr/lib64/python2.6/lib-old', '/usr/lib64/python2.6/lib-dynload',
'/usr/lib64/python2.6/site-packages',
'/usr/lib64/python2.6/site-packages/gst-0.10',
'/usr/lib64/python2.6/site-packages/gtk-2.0',
'/usr/lib64/python2.6/site-packages/webkit-1.0',
'/usr/lib64/python2.6/site-packages/wx-2.8-gtk2-unicode',
'/usr/lib/python2.6/site-packages',
'/usr/lib/python2.6/site-packages/setuptools-0.6c11-py2.6.egg-info']

Python packages and modules (most are optional):

Name               Installed    Version                    Path
minfx              True         1.0.7
/sbinlab2/tlinnet/software/NMR-relax/disp_spin_speed/minfx
bmrblib            True         1.0.3
/usr/lib/python2.6/site-packages/bmrblib
numpy              True         1.4.1
/usr/lib64/python2.6/site-packages/numpy
scipy              True         0.7.2
/usr/lib64/python2.6/site-packages/scipy
wxPython           True         2.8.12.0 (gtk2-unicode)
/usr/lib64/python2.6/site-packages/wx-2.8-gtk2-unicode/wx
matplotlib         True         0.99.1.1
/usr/lib64/python2.6/site-packages/matplotlib
mpi4py             True         1.3.1
/usr/lib64/python2.6/site-packages/mpi4py
epydoc             False
optparse           True         1.5.3
/usr/lib64/python2.6/optparse.pyc
readline           True
/usr/lib64/python2.6/lib-dynload/readline.so
profile            True
/usr/lib64/python2.6/profile.pyc
bz2                True
/usr/lib64/python2.6/lib-dynload/bz2.so
gzip               True
/usr/lib64/python2.6/gzip.pyc
io                 True
/usr/lib64/python2.6/io.pyc
xml                True         0.8.4 (PyXML)
/usr/lib64/python2.6/site-packages/_xmlplus/__init__.pyc
xml.dom.minidom    True
/usr/lib64/python2.6/site-packages/_xmlplus/dom/minidom.pyc

relax information:
    Version:                 repository checkout
    Processor fabric:        Uni-processor.

relax C modules:

Module                        Compiled    File type
                                                               Path
target_functions.relax_fit    True        ELF 64-bit LSB shared
object, x86-64, version 1 (SYSV), dynamically linked, not stripped
/sbinlab2/tlinnet/software/NMR-relax/disp_spin_speed/target_functions/relax_fit.so




--
Troels Emtekær Linnet
PhD student
Copenhagen University
SBiNLab, 3-0-41
Ole Maaloes Vej 5
2200 Copenhagen N
Tlf: +45 353-22083
Lync Tlf: +45 353-30195

_______________________________________________
relax (http://www.nmr-relax.com)

This is the relax-devel mailing list
relax-devel@xxxxxxx

To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-devel

Re: Error? WARNING: terminal is not fully functional

Header

Content

Related Messages