mail[bug #23293] PDB HETATM loading error - the last HETATM record is sometimes not read from the PDB file.


Others Months | Index by Date | Thread Index
>>   [Date Prev] [Date Next] [Thread Prev] [Thread Next]

Header


Content

Posted by Edward d Auvergne on February 19, 2015 - 14:17:
URL:
  <http://gna.org/bugs/?23293>

                 Summary: PDB HETATM loading error - the last HETATM record is
sometimes not read from the PDB file.
                 Project: relax
            Submitted by: bugman
            Submitted on: Thu 19 Feb 2015 01:17:04 PM UTC
                Category: relax's source code
Specific analysis category: All analyses
                Priority: 5 - Normal
                Severity: 2 - Minor
                  Status: None
             Assigned to: bugman
         Originator Name: 
        Originator Email: 
             Open/Closed: Open
                 Release: 3.3.6
         Discussion Lock: Any
        Operating System: All systems

    _______________________________________________________

Details:

The last HETATM record of a molecule, when multiple molecules are present in
the PDB file, will not be read.  This does not affect the last molecule.

The following files are attached:

    - A test PDB file 'in.pdb'.
    - A simple relax script 'test.py' which creates a data pipe, loads
'in.pdb' and creates the output 'out.pdb' file.
    - The resultant corrupted 'out.pdb' file.



    _______________________________________________________

File Attachments:


-------------------------------------------------------
Date: Thu 19 Feb 2015 01:17:05 PM UTC  Name: out.pdb  Size: 2kB   By: bugman

<http://gna.org/bugs/download.php?file_id=23868>
-------------------------------------------------------
Date: Thu 19 Feb 2015 01:17:05 PM UTC  Name: test.py  Size: 108B   By: bugman

<http://gna.org/bugs/download.php?file_id=23869>
-------------------------------------------------------
Date: Thu 19 Feb 2015 01:17:04 PM UTC  Name: in.pdb  Size: 2kB   By: bugman

<http://gna.org/bugs/download.php?file_id=23867>

    _______________________________________________________

Reply to this item at:

  <http://gna.org/bugs/?23293>

_______________________________________________
  Message sent via/by Gna!
  http://gna.org/




Related Messages


Powered by MHonArc, Updated Fri Feb 20 09:40:14 2015