Problem with the palmer.py script -- January 08, 2008 - 04:17

Hi all,

I got an error while using the palmer.py script with the 1.2 line of 
relax (subversion repository).

The data was recorded at only one field for a protein with no 3D structure.

I first tried to run the three stages one after the other (1, 2, 3) with 
no monte carlo simulations (sims=0). It worked fine and I then wanted to 
make monte carlo simulations. I put 'sims=500' in the stage 1 and ran 
it. It worked fine. I then tried to run the stage 2 and got into this 
error :

=======================
relax> nuclei(heteronuc='N')

relax> state.load(file='stage1.save', dir=None)
Opening the file 'stage1.save.bz2' for reading.


Loading all the Modelfree 4 data.

relax> palmer.extract(run='m1', dir=None)
Traceback (most recent call last):
 File "/home/semor/packages/relax-1.2/relax", line 454, in ?
   Relax()
 File "/home/semor/packages/relax-1.2/relax", line 166, in __init__
   self.interpreter.run()
 File "/home/semor/packages/relax-1.2/prompt/interpreter.py", line 216, 
in run
   run_script(intro=self.relax.intro_string, local=self.local, 
script_file=self.relax.script_file, quit=1)
 File "/home/semor/packages/relax-1.2/prompt/interpreter.py", line 391, 
in run_script
   console.interact(intro, local, script_file, quit)
 File "/home/semor/packages/relax-1.2/prompt/interpreter.py", line 343, 
in interact_script
   execfile(script_file, local)
 File "./palmer_2.py", line 129, in ?
   exec_stage_2(runs)
 File "./palmer_2.py", line 69, in exec_stage_2
   palmer.extract(run=name)
 File "/home/semor/packages/relax-1.2/prompt/palmer.py", line 263, in 
extract
   self.__relax__.generic.palmer.extract(run=run, dir=dir)
 File "/home/semor/packages/relax-1.2/generic_fns/palmer.py", line 578, 
in extract
   data.chi2 = float(row[1])
IndexError: list index out of range
=======================

Is this a bug or simply am I doing something wrong ?

Thanks !


Sébastien