Re: latex script on final results -- November 10, 2008 - 02:06

Are you certain your RESULTS variable points towards 'final/ 
results.bz2'?  The output from your job below differs vs. mine, in  
particular these lines in the output:

relax> results.read(file='final/results.bz2', dir=None)
Opening the file 'final/results.bz2' for reading.

Perhaps you should attach the input script text as well as the output  
text?

Doug


On Nov 9, 2008, at 5:45 PM, Tyler Reddy wrote:

> It looks like both problems were already fixed in my script, so it  
> must be
> something else?
>
>
> Quoting Douglas Kojetin <douglas.kojetin@xxxxxxxxx>:
>
> > I made the following changes to the distributed latex_mf_table.py   
> > file, and it seemed to work OK.
> >
> > % diff updated_latex_mf_table.py old_latex_mf_table.py
> > 42c42
> > < RESULTS_FILE = 'final/results.bz2'
> > ---
> > > RESULTS_FILE = 'final'
> > 171c171
> > <         for spin, spin_id in spin_loop(return_id=True):
> > ---
> > >         for spin, spin_id in spin_loop(return_id=True)
> >
> > I think your error might be caused by the change on line 42, but  
> > an  error will popup for the change on line 171 (the for statement  
> > is  missing a semi-colon ).
> >
> > Doug
> >
> >
> >
> > On Nov 9, 2008, at 7:55 AM, Tyler Reddy wrote:
> >
> > > Hi,
> > >
> > > My model-free results from the full analysis python script have   
> > > converged and
> > > the 'final' run is complete. I moved the latex table script into  
> > > the  'final'
> > > directory, but when I execute the script I get the output below.  
> > > I  think Edward
> > > mentioned this script might need some work. Has anyone used it   
> > > successfully?
> > >
> > > Tyler
> > >
> > > Output:
> > >
> > > Latex()
> > > ----------------------------------------------------------------------------------------------------
> > >
> > > relax> pipe.create(pipe_name='results', pipe_type='mf')
> > >
> > > relax> results.read(file='results', dir=None)
> > > Opening the file 'results' for reading.
> > > Traceback (most recent call last):
> > > File "/Applications/relax-1.3.1/relax-1.3/relax", line 422, in   
> > > <module>
> > >   Relax()
> > > File "/Applications/relax-1.3.1/relax-1.3/relax", line 131, in   
> > > __init__
> > >   self.interpreter.run(self.script_file)
> > > File "/Applications/relax-1.3.1/relax-1.3/prompt/interpreter.py",   
> > > line 270, in
> > > run
> > >   return run_script(intro=self.__intro_string, local=self.local,
> > > script_file=script_file, quit=self.__quit_flag,   
> > > show_script=self.__show_script,
> > > raise_relax_error=self.__raise_relax_error)
> > > File "/Applications/relax-1.3.1/relax-1.3/prompt/interpreter.py",   
> > > line 531, in
> > > run_script
> > >   return console.interact(intro, local, script_file, quit,
> > > show_script=show_script, raise_relax_error=raise_relax_error)
> > > File "/Applications/relax-1.3.1/relax-1.3/prompt/interpreter.py",   
> > > line 427, in
> > > interact_script
> > >   execfile(script_file, local)
> > > File "latex_mf_table.py", line 220, in <module>
> > >   Latex()
> > > File "latex_mf_table.py", line 53, in __init__
> > >   results.read(RESULTS_FILE, dir=None)
> > > File "/Applications/relax-1.3.1/relax-1.3/prompt/results.py",  
> > > line  99, in read
> > >   results.read(file=file, directory=dir)
> > > File "/Applications/relax-1.3.1/relax-1.3/generic_fns/ 
> > > results.py",  line 98, in
> > > read
> > >   read_function = ds.from_xml(file, dir=directory)
> > > File "/Applications/relax-1.3.1/relax-1.3/data/__init__.py", line   
> > > 185, in
> > > from_xml
> > >   self[self.instance.current_pipe].from_xml(relax_node, dir=dir)
> > > File "/Applications/relax-1.3.1/relax-1.3/data/ 
> > > pipe_container.py",  line 164,
> > > in from_xml
> > >   self.structure.from_xml(str_nodes[0], dir=dir)
> > > File "/Applications/relax-1.3.1/relax-1.3/generic_fns/structure/  
> > > api_base.py",
> > > line 276, in from_xml
> > >   loaded = self.load_pdb(file_path=dir + sep + self.file[i],   
> > > model=None,
> > > struct_index=i)
> > > TypeError: unsupported operand type(s) for +: 'NoneType' and 'str'
> > >
> > >
> > >
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