From: Edward d'Auvergne <edward@xxxxxxxxxxxxx>
To: Raj Jose <isodna05@xxxxxxxxx>
Cc: relax-users@xxxxxxx
Sent: Saturday, February 21, 2009 10:29:40 AM
Subject: Re: question
regarding output format
Hi,
What you have encountered here is a bug. It is a relic of a complete
redesign of relax which happened between the 1.2 and 1.3 versions,
where some small bits of code have not yet been converted to the new
design. I fixed this bug a few days ago for you though. These
changes are located in the relax source code repository. You can
either wait for me to release a new version (which probably will not
occur for while) or to fetch the code directly from the relax
repository. For the last option, you just have to type:
$ svn co svn://svn.gna.org/svn/relax/1.3 relax-1.3
or if this doesn't work:
$ svn co
http://svn.gna.org/svn/relax/1.3 relax-1.3
You will need the Subversion program installed to do this. The copy
of relax in the resultant 'relax-1.3' directory will
have the fixes
you need. I hope this helps.
Regards,
Edward
On Sat, Feb 21, 2009 at 4:33 PM, Raj Jose <
isodna05@xxxxxxxxx> wrote:
> Dr Edwards,
>
> I tried to run the below commands you sent to me on one of the files
> ~/relax-1.3.3/test_suite/shared_data/model_free/results_1.2.bz2
>
>
> relax> pipe.create('prdata','mf')
> relax> results.read('results_1.2')
> Opening the file 'results_1.2.bz2' for reading.
> relax 1.2 model-free results file.
>
> Generating the sequence.
>
> Setting the diffusion tensor.
> Diffusion type: sphere
> relax> value.display('S2')
> RelaxError: The parameter argument None must be a string.
>
> if i say
>
> relax> value.display('prdata','S2')
> Traceback (most
recent call last):
> File "<console>", line 1, in <module>
> File "/home/prem/programs/relax-1.3.3/prompt/value.py", line 152, in
> display
> self.__relax__.generic.value.display(run=run, param=param)
> TypeError: display() got an unexpected keyword argument 'run'
>
> I get the above error.
> i am still trying to get a grip on RELAX. sorry to trouble you with these
> trivial issues.
>
> thanks
>
> prem
>
>
>
> Prem Raj B Joseph
> Post Dcotoral Fellow
> Dept. of Biochemistry and Molecular Biology
> Sealy Center for Structural Biology and Molecular Biophysics
> 5.142 Medical Branch Building
> University of Texas Medical Branch
> Galveston, TX 77555-1055
> Cell: 409-354-8536
>
> ________________________________
> From: Edward d'Auvergne <
edward@xxxxxxxxxxxxx>
> To: Raj Jose <
isodna05@xxxxxxxxx>
> Cc:
relax-users@xxxxxxx> Sent: Thursday, February 19, 2009 3:45:32 AM
> Subject: Re: question regarding output format
>
> Hi,
>
> This depends on which format you would like to use. There is one
> script, sample_scripts/latex_mf_table.py, that will generate a LaTeX
> table from your model-free data. If this is not what you need, then
> the output text file could possibly also be imported into Excel as a
> field delimited file with the delimiter set to '&'. If you need
> something a bit different, this script could be modified to produce
> the table in a
slightly different format. Or you could output the
> results by typing the following into the relax:
>
> pipe.create('my data', 'mf')
> results.read('your_results_file')
> value.display('S2')
> value.display('S2f')
> value.display('S2s')
> value.display('te')
> value.display('tf')
> value.display('ts')
> value.display('Rex')
>
> etc. I hope this helps. Otherwise there is alway the option of
> cutting and pasting from the results file directly.
>
> Regards,
>
> Edward
>
>
>
>
> On Thu, Feb 19, 2009 at 2:06 AM, Raj Jose <
isodna05@xxxxxxxxx> wrote:
>> Hello,
>>
>> Thanks Dr. Edward for the reply and the suggestions.
>> I was wondering if there are any general python scripts available to
get
>> the final outputs in a presentable
>> format of all the modelfree parameter , for all the residues after the
>> final run.
>>
>> thanks
>> prem
>>
>> Prem Raj B Joseph
>> Post Dcotoral Fellow
>> Dept. of Biochemistry and Molecular Biology
>> Sealy Center for Structural Biology and Molecular Biophysics
>> 5.142 Medical Branch Building
>> University of Texas Medical Branch
>> Galveston, TX 77555-1055
>> Cell: 409-354-8536
>>
>>
>>
>>
>>
>> _______________________________________________
>> relax (
http://nmr-relax.com)
>>
>> This is the relax-users mailing list
>>
relax-users@xxxxxxx>>
>> To unsubscribe from this list, get a password
>> reminder, or change your subscription options,
>> visit the list information page at
>>
https://mail.gna.org/listinfo/relax-users>>
>>
>
>
>
> _______________________________________________
> relax (
http://nmr-relax.com)
>
> This is the relax-users mailing list
>
relax-users@xxxxxxx>
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> reminder, or change your subscription options,
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>
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Re: question regarding output format