The internal reader accepts
these CONECT records perfectly. An easy test is to read in the PDB
file with CONECT records with the internal reader and then write it
out again. They should be preserved. If not, this is a bug which can
be reported at https://gna.org/bugs/?func=additem&group=relax which I
can then repair.
I think the mf_multimodel script uses the internal reader...what is the
command to read with the internal reader?
This is an argument to the structure.read_pdb() user function. This
now defaults to the internal reader.
I have executed the command structure.write_pdb() and the pdb file written
does not keep the lines with CONECT. This seems to be a similar to the
problem that Michael has reported a couple of days ago when using
modelsel.py.
I have tried to read the pdb with parser='scientific' and the problem about
the "CONECT lines" disappears.
Do you want me to write a bug report anyway?
Regards,
TiagoP
RE: MF_Multimodel