Re: relax on Mac with fink -- February 21, 2010

Hi again,

I forgot to mention that the Mac in question is a Macbook Pro with a 2.8GHz Intel Core 2 Duo and 4 GB of RAM. It is running Mac OS X 10.6.2 withfink 0.29.10.


Regards,


Séb




On 10-02-21 2:59 PM, Sébastien Morin wrote:

Hi,

I just installed relax on a Mac using fink.
      relax-py26    1.3.4-2    Protein dynamics by NMR relax. data analysis

I also installed the dependencies using fink.
      minfx-py26    1.0.2-1    The minfx optimisation library
      numpy-py26    [virtual package]
      python26    1:2.6.4-101    Interpreted, object-oriented language
      scientificpython-py26    2.8-1    Python modules for scientific
computing
      scons    0.98.3-1    Python-based build tool

I created a link in the relax directory pointing to the minfx directory:
      minfx@ ->  /sw/lib/python2.6/site-packages/minfx/

I compiled the relaxation curve fitting modules using scons but got the
following deprecation warnings:

========
scons: Reading SConscript files ...
/sw/lib/scons-0.98.3/SCons/Platform/posix.py:38: DeprecationWarning: The
popen2 module is deprecated.  Use the subprocess module.
    import popen2
/sw/lib/scons-0.98.3/SCons/Tool/msvs.py:37: DeprecationWarning: the md5
module is deprecated; use hashlib instead
========

After, I launched relax but got the following warning:

========
ImportError: dlopen(/sw/lib/relax-py26/maths_fns/relax_fit.so, 2): no
suitable image found.  Did find:
      /sw/lib/relax-py26/maths_fns/relax_fit.so: mach-o, but wrong
architecture
Relaxation curve fitting is unavailable, try compiling the C modules.
========

Concerning the test-suite, there were nultiple errors:
      System tests
          4 failures + 20 errors
      Unit tests
          12 errors

The unit tests errors were all the same:

======
Traceback (most recent call last):
    File
"/sw/lib/relax-py26/test_suite/unit_tests/_generic_fns/_structure/test_scientific.py",
line 54, in setUp
      self.data = Scientific_data()
    File "/sw/lib/relax-py26/generic_fns/structure/scientific.py", line
60, in __init__
      raise RelaxError, "The Scientific python PDB module
Scientific.IO.PDB could not be imported."
RelaxError: RelaxError: The Scientific python PDB module
Scientific.IO.PDB could not be imported.
======

...


I guess all these errors are not normal...

Any idea to help me debug this issue ?

Thank you !!!


Séb


--
Sébastien Morin
PhD Student
S. Gagné NMR Laboratory
Université Laval&  PROTEO
Québec, Canada

Re: relax on Mac with fink

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