Dear Lalit and Michael, Welcome to the relax mailing lists. I've looked into this and it appears to be a problem in the script with the nomenclature of one of your spin systems. Michael, would you be able to look into this? The problem appear to be in the script. Lalit, it would help significantly if you could provide some more information. With the current information, we can see it is a problem with spin names. However there is not enough info to pinpoint the problem. Would you be able to give some more information? For example if you execute "sequence.display()" prior to line 36 in the script, this will display the sequence which might help with the debugging. Cheers, Edward ---------- Forwarded message ---------- From: Deshmukh, Lalit (NIH/NIDDK) [F] <lalit.deshmukh@xxxxxxx> Date: 23 May 2011 18:23 Subject: problems with final_data_extraction.py To: "relax-users@xxxxxxx" <relax-users@xxxxxxx> Hi, I am having some trouble with final_data_extraction.py script. Here is the error. ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- relax> results.read(file='results', dir=None) Opening the file 'results.bz2' for reading. Traceback (most recent call last): File "/usr/local/bin/relax", line 381, in <module> Relax() File "/usr/local/bin/relax", line 117, in __init__ self.interpreter.run(self.script_file) File "/usr/local/relax-1.3.10/prompt/interpreter.py", line 294, in run return run_script(intro=self.__intro_string, local=locals(), script_file=script_file, quit=self.__quit_flag, show_script=self.__show_script, raise_relax_error=self.__raise_relax_error) File "/usr/local/relax-1.3.10/prompt/interpreter.py", line 597, in run_script return console.interact(intro, local, script_file, quit, show_script=show_script, raise_relax_error=raise_relax_error) File "/usr/local/relax-1.3.10/prompt/interpreter.py", line 483, in interact_script exec_script(script_file, local) File "/usr/local/relax-1.3.10/prompt/interpreter.py", line 376, in exec_script runpy.run_module(module, globals) File "/usr/lib/python2.6/runpy.py", line 140, in run_module fname, loader, pkg_name) File "/usr/lib/python2.6/runpy.py", line 34, in _run_code exec code in run_globals File "/u/deshmukhl/Capsid/T1T1p_NOE/Relax/Calc/local_tm/aic/final_data_extraction.py", line 36, in <module> spin_no = spin_id[spin_id.index(':')+1:spin_id.index('&')] ValueError: substring not found ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thanks in advance, Regards, Lalit _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list relax-users@xxxxxxx To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users