mailRe: relax 1.3.13/14 oddities


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Posted by Edward d'Auvergne on March 26, 2012 - 19:55:
Hi,

Could you also copy and paste the full output of:

$ relax --info

This will help a lot.  I am using Python 2.5, Python 2.6 and Python
2.7 (the last is via an application framework at
/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/bin/python
which I use to create the monster DMG
file).  In all three, the GUI is working fine.  Well, the Python 2.5
version refuses to quit, but still works.  I have pasted the 'relax
-i' text at the end for reference.  This is from the repository r15640
revision of the 1.3 line.

Regards,

Edward


/usr/bin/python2.5 relax -i



                                     relax repository checkout

                              Molecular dynamics by NMR data analysis

                             Copyright (C) 2001-2006 Edward d'Auvergne
                         Copyright (C) 2006-2012 the relax development team

This is free software which you are welcome to modify and redistribute
under the conditions of the
GNU General Public License (GPL).  This program, including all
modules, is licensed under the GPL
and comes with absolutely no warranty.  For details type 'GPL' within
the relax prompt.

Assistance in using the relax prompt and scripting interface can be
accessed by typing 'help' within
the prompt.

Processor fabric:  Uni-processor.

Hardware information:
    Machine:                 i386
    Processor:               i386
    Endianness:              little
    Total RAM size:          ? Mb
    Total swap size:         ? Mb

Operating system information:
    System:                  Darwin
    Release:                 10.7.0
    Version:                 Darwin Kernel Version 10.7.0: Mon Mar 28
13:34:53 EDT 2011; legacy kernel v7
:xnu-1504.9.37/BUILD/obj/RELEASE_I386
    Mac version:             10.6.7 (, , ) i386
    Distribution:
    Full platform string:    Darwin-10.7.0-i386-32bit

Python information:
    Architecture:            32bit
    Python version:          2.5.4
    Python build:            r254:67916, Jun 24 2010 21:47:25
    Python compiler:         GCC 4.2.1 (Apple Inc. build 5646)
    Libc version:
    Python executable:       /usr/bin/python2.5
    Python module path:      ['/Users/edward/relax/relax-1.3',
'/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python25.zip',
'/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5',
'/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/plat-darwin',
'/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/plat-mac',
'/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/plat-mac/lib-scriptpackages',
'/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python',
'/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/lib-tk',
'/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/lib-dynload',
'/Library/Python/2.5/site-packages',
'/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/PyObjC',
'/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/wx-2.8-mac-unicode',
'/Users/edward/relax/relax-1.3/extern/scientific_python/darwin']

Python packages (most are optional):

Package              Installed       Version         Path
minfx                True            Unknown
/Users/edward/relax/relax-1.3/minfx
bmrblib              True            Unknown
/Users/edward/relax/relax-1.3/bmrblib
numpy                True            1.2.1
/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/numpy
scipy                False
wxPython             True            2.8.8.1
/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/wx-2.8-mac-unicode/wx
mpi4py               False
epydoc               False
optparse             True            1.5.3
/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/optparse.py
readline             True
/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/lib-dynload/readline.so
profile              True
/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/profile.py
bz2                  True
/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/lib-dynload/bz2.so
gzip                 True
/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/gzip.py
os.devnull           True
/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/os.py

Compiled relax C modules:
    Relaxation curve fitting: True




/usr/bin/python2.6 relax -i
RelaxWarning: os.popen3 is deprecated.  Use the subprocess module.



                                     relax repository checkout

                              Molecular dynamics by NMR data analysis

                             Copyright (C) 2001-2006 Edward d'Auvergne
                         Copyright (C) 2006-2012 the relax development team

This is free software which you are welcome to modify and redistribute
under the conditions of the
GNU General Public License (GPL).  This program, including all
modules, is licensed under the GPL
and comes with absolutely no warranty.  For details type 'GPL' within
the relax prompt.

Assistance in using the relax prompt and scripting interface can be
accessed by typing 'help' within
the prompt.

Processor fabric:  Uni-processor.

Hardware information:
    Machine:                 i386
    Processor:               i386
    Endianness:              little
    Total RAM size:          ? Mb
    Total swap size:         ? Mb

Operating system information:
    System:                  Darwin
    Release:                 10.7.0
    Version:                 Darwin Kernel Version 10.7.0: Mon Mar 28
13:34:53 EDT 2011; legacy kernel v7
:xnu-1504.9.37/BUILD/obj/RELEASE_I386
    Mac version:             10.6.7 (, , ) i386
    Distribution:
    Full platform string:    Darwin-10.7.0-i386-64bit

Python information:
    Architecture:            64bit
    Python version:          2.6.1
    Python branch:           tags/r261
    Python build:            r261:67515, Jun 24 2010 21:47:49
    Python compiler:         GCC 4.2.1 (Apple Inc. build 5646)
    Libc version:
    Python implementation:   CPython
    Python revision:         67515
    Python executable:       /usr/bin/python2.6
    Python flags:            sys.flags(debug=0, py3k_warning=0,
division_warning=0, division_new=0, inspect=0, interactive=0,
optimize=0, dont_write_bytecode=0, no_user_site=0, no_site=0,
ignore_environment=0, tabcheck=0, verbose=0, unicode=0,
bytes_warning=0)
    Python float info:
sys.floatinfo(max=1.7976931348623157e+308, max_exp=1024,
max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021,
min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.2204460492503131e-16,
radix=2, rounds=1)
    Python module path:      ['/Users/edward/relax/relax-1.3',
'/usr/local/lib/wxPython-unicode-2.8.12.1/lib/python2.6/site-packages',
'/usr/local/lib/wxPython-unicode-2.8.12.1/lib/python2.6/site-packages/wx-2.8-mac-unicode',
'/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python26.zip',
'/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6',
'/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/plat-darwin',
'/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/plat-mac',
'/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/plat-mac/lib-scriptpackages',
'/System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python',
'/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/lib-tk',
'/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/lib-old',
'/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/lib-dynload',
'/Library/Python/2.6/site-packages',
'/usr/local/lib/wxPython-unicode-2.8.12.1/lib/python2.6',
'/System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/PyObjC',
'/System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/wx-2.8-mac-unicode',
'/Users/edward/relax/relax-1.3/extern/scientific_python/darwin']

Python packages (most are optional):

Package              Installed       Version         Path
minfx                True            Unknown
/Users/edward/relax/relax-1.3/minfx
bmrblib              True            Unknown
/Users/edward/relax/relax-1.3/bmrblib
numpy                True            1.2.1
/System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/numpy
scipy                False
wxPython             True            2.8.12.1
/usr/local/lib/wxPython-unicode-2.8.12.1/lib/python2.6/site-packages/wx-2.8-mac-unicode/wx
mpi4py               False
epydoc               False
optparse             True            1.5.3
/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/optparse.py
readline             True
/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/lib-dynload/readline.so
profile              True
/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/profile.py
bz2                  True
/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/lib-dynload/bz2.so
gzip                 True
/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/gzip.py
os.devnull           True
/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/os.pyc

Compiled relax C modules:
    Relaxation curve fitting: True




/Users/edward/bin/python2.7 relax -i



                                     relax repository checkout

                              Molecular dynamics by NMR data analysis

                             Copyright (C) 2001-2006 Edward d'Auvergne
                         Copyright (C) 2006-2012 the relax development team

This is free software which you are welcome to modify and redistribute
under the conditions of the
GNU General Public License (GPL).  This program, including all
modules, is licensed under the GPL
and comes with absolutely no warranty.  For details type 'GPL' within
the relax prompt.

Assistance in using the relax prompt and scripting interface can be
accessed by typing 'help' within
the prompt.

Processor fabric:  Uni-processor.

Hardware information:
    Machine:                 i386
    Processor:               i386
    Endianness:              little
    Total RAM size:          ? Mb
    Total swap size:         ? Mb

Operating system information:
    System:                  Darwin
    Release:                 10.7.0
    Version:                 Darwin Kernel Version 10.7.0: Mon Mar 28
13:34:53 EDT 2011; legacy kernel v7
:xnu-1504.9.37/BUILD/obj/RELEASE_I386
    Mac version:             10.6.7 (, , ) i386
    Distribution:
    Full platform string:    Darwin-10.7.0-i386-64bit

Python information:
    Architecture:            64bit
    Python version:          2.7.2
    Python branch:
    Python build:            default, Sep 28 2011 12:00:11
    Python compiler:         GCC 4.2.1 (Apple Inc. build 5659)
    Libc version:
    Python implementation:   CPython
    Python revision:
    Python executable:
/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
    Python flags:            sys.flags(debug=0, py3k_warning=0,
division_warning=0, division_new=0, inspect=0, interactive=0,
optimize=0, dont_write_bytecode=0, no_user_site=0, no_site=0,
ignore_environment=0, tabcheck=0, verbose=0, unicode=0,
bytes_warning=0)
    Python float info:
sys.float_info(max=1.7976931348623157e+308, max_exp=1024,
max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021,
min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.220446049250313e-16,
radix=2, rounds=1)
    Python module path:      ['/Users/edward/relax/relax-1.3',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/py2app-0.6.3-py2.7.egg',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/macholib-1.4.2-py2.7.egg',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/modulegraph-0.9.1-py2.7.egg',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/altgraph-0.9-py2.7.egg',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python27.zip',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-darwin',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-mac',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-mac/lib-scriptpackages',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-tk',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-old',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-dynload',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages',
'/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/wx-2.9.2-osx_cocoa',
'/Users/edward/relax/relax-1.3/extern/scientific_python/darwin']

Python packages (most are optional):

Package              Installed       Version         Path
minfx                True            Unknown
/Users/edward/relax/relax-1.3/minfx
bmrblib              True            Unknown
/Users/edward/relax/relax-1.3/bmrblib
numpy                True            1.6.1
/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy
scipy                True            0.9.0
/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy
wxPython             True            2.9.2.4
/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/wx-2.9.2-osx_cocoa/wx
mpi4py               True            1.2.2
/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/mpi4py
epydoc               False
optparse             True            1.5.3
/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/optparse.pyc
readline             True
/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-dynload/readline.so
profile              True
/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/profile.pyc
bz2                  True
/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-dynload/bz2.so
gzip                 True
/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/gzip.pyc
os.devnull           True
/Users/edward/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/os.pyc

Compiled relax C modules:
    Relaxation curve fitting: True



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