mailRe: relax 1.3.13/14 oddities


Others Months | Index by Date | Thread Index
>>   [Date Prev] [Date Next] [Thread Prev] [Thread Next]

Header


Content

Posted by Edward d'Auvergne on April 13, 2012 - 10:30:
Hi Jack,

Could you remove 'scientificpython-py%type_pkg[python] (>= 2.9.0)'
from the 'Depends' and 'BuildDepends' sections of the relax fink info
file?  The tiny fraction of scientific-python modules relax uses is
now distributed with the relax source code, so scientific-python is no
longer a dependency.

Cheers,

Edward



On 26 March 2012 19:16, Edward d'Auvergne <edward.dauvergne@xxxxxxxxx> wrote:
Hi Jack,

Thank you for updating this!  From memory, I did see a similar problem
when I was using the fink versions of all the software required.
Though I also had many problems with dependency clashes with Python,
wxPython, numpy, and scipy (note this is different to Scientific
Python which is no longer a dependency, see
http://pdb.finkproject.org/pdb/package.php/scipy-py27) - I had to use
the sources and these different relax dependencies had their own
dependencies which were not compatible with each other.  The problem,
I think, was the dependance on different gcc versions, so each was
taking a day or longer to build as fink kept rebuilding the full tool
chain.  Anyway, that's not completely related to this problem and
might already be resolved in fink.

The problem looks more like a wxPython issue.  Would you be able to
tell me the fink repository software and versions you used for this so
I can try to replicate the problem?  Do you use the binary
distribution archive for the dependencies or have fink compile from
the source archives?  I am using XCode 3.2.2, but I don't think using
4.2 will change this problem.  If you had the exact sequence of fink
commnds to set the relax dependencies up, that would be appreciated as
I could then be sure that I have close to the same setup as you.  Then
I could debug and find the exact xwgtk problem, and come up with a
special work around.

Cheers!

Edward




On 26 March 2012 18:14, Jack Howarth <howarth@xxxxxxxxxxxxxxxx> wrote:
Edward,
  I am in the process of updating the relax-py and relax packages in fink 
and
macports to the latest release. However I am seeing some oddities with the 
new
gui interface. In both cases, relax 1.3.13 and 1.3.14 exhibits a bug when
executed as 'relax --gui'. The gui interface window opens much larger than 
the
displayed contents. Only if I refresh the window does the contents properly
expand out to the actual size of the window (by clicking on the green zoom
button in the window frame twice). If I move aside the window, I also see 
a small
square with a butterfly icon left on the screen. This square can't be 
closed or
moved. Running 'relax --test-suite' is even more problematic as it seems to
be trapped in an endless loop of display the squares with the butterfly 
icon
and segfaults on exiting...

% relax --test-suite
/sw/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py:14448: 
UserWarning: wxPython/wxWidgets release number mismatch
 warnings.warn("wxPython/wxWidgets release number mismatch")
Echoing of user function calls has been enabled.




#############################
# System / functional tests #
#############################


.........................................................................................................................................................................................................................................
----------------------------------------------------------------------
Ran 233 tests in 291.075s

OK




##############
# Unit tests #
##############


................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
----------------------------------------------------------------------
Ran 1232 tests in 11.183s

OK




#############
# GUI tests #
#############



(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type
.
(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type
.
(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type

(python2.7:9037): Gtk-WARNING **: Unable to find default local directory 
monitor type
..
----------------------------------------------------------------------
Ran 4 tests in 70.926s

OK




###################################
# Summary of the relax test suite #
###################################


# Optional packages/modules
###########################

No tests skipped due to missing modules.

# Synopsis
##########

System/functional tests ......................................... [ OK ]
Unit tests ...................................................... [ OK ]
GUI tests ....................................................... [ OK ]
Synopsis ........................................................ [ OK ]



Segmentation fault

It is odd that the GUI tests pass but that relax segfaults in the process.
                Jack
ps This is on x86_64 fink under darwin10 using Xcode 4.2.

_______________________________________________
relax (http://nmr-relax.com)

This is the relax-users mailing list
relax-users@xxxxxxx

To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-users



Related Messages


Powered by MHonArc, Updated Fri Apr 13 15:40:08 2012