How big the influence of pdb structure on final result -- October 08, 2012 - 18:03

Hi Edward,

The protein I am working with has several conformations and the exchange rate is in around 100micro seconds timescale. I am wondering when I choose different pdb structure as an input file to "relax", how big the final result (S^2) will differ from each other? Is there any literature talking about the influence of choosing structure coordinates? 

Thanks for your help

--

Xi Huang

PhD Candidate, Division of Physical Chemistry

Gail E. Fanucci Research Group

Department of Chemistry

University of Florida