Hello Kozo,
Would you be able to submit a bug report for this? The link is
http://www.nmr-relax.com/manual/Reporting_bugs.html. Cheers. It
would be useful if you could describe what you have done. The more
information the better. If you have used a script, you can attach the
script to the bug report. Otherwise describe all the steps you
performed in the GUI or prompt modes. The RelaxFault you have
encountered really should never be reached. The only way this can
happen is if the S2f order parameter is optimised to the value of
None, or the optimisation is skipped entirely. But relax should have
stopped you long before reaching this point, clearly explaining what
went wrong.
Also the output you show is totally unidentifiable. I could guess
that these are some sort of order parameters, but it could be chemical
exchange or possibly even internal correlation times. Therefore I
cannot tell you why you have no values for residues 6-9. Also because
there is zero information about how you reached the RelaxFault, that
also makes it beyond impossible to determine the problem. If you can
provide more information, this would considerably help me in
identifying what went wrong.
Cheers,
Edward
P. S. I was wondering if you have followed my graphical tutorials in
how to use the relax GUI for a model-free analysis
(http://www.nmr-relax.com/manual/new_protocol_in_GUI.html, in the
model-free chapter of the user manual
http://www.nmr-relax.com/manual/Model_free_analysis.html)? And did
you use relax to determine the R1, R2, and NOE values?
On 20 November 2012 15:16, Kozo Keisho <crystalrlx@xxxxxxxxxxx> wrote:
Traceback (most recent call last):
File "gui/analyses/execute.pyc", line 87, in run
File "gui/analyses/auto_model_free.pyc", line 808, in run_analysis
File "auto_analyses/dauvergne_protocol.pyc", line 234, in __init__
File "auto_analyses/dauvergne_protocol.pyc", line 735, in execute
File "auto_analyses/dauvergne_protocol.pyc", line 901, in write_results
File "prompt/uf_objects.pyc", line 219, in __call__
File "generic_fns/pymol_control.pyc", line 504, in macro_write
File "generic_fns/pymol_control.pyc", line 358, in create_macro
File "specific_fns/model_free/macro_base.pyc", line 499, in create_macro
File "specific_fns/model_free/macro_base.pyc", line 179, in classic_style
Storing the relax state in the file 'relax_state_20121120_113729.bz2'.
RelaxFault: RelaxError: Impossible to be here, please re-run relax with the
'--debug' flag and summit a bug report at https://gna.org/projects/relax/.
in viewer i get something like this
# mol_name res_num res_name spin_num spin_name value
error
Juk_relx_mol1 1 ALA 20 N
0.7657749408593296 0.04038631865475668
Juk_relx_mol1 1 ALA 25 H None
None
Juk_relx_mol1 2 MSE 30 N
0.8019303974275404 0.048612135756403115
Juk_relx_mol1 2 MSE 38 H None
None
Juk_relx_mol1 2 MSE 44 HE1 None
None
Juk_relx_mol1 6 TRP 90 N None
None
Juk_relx_mol1 6 TRP 104 H None
None
Juk_relx_mol1 6 TRP 100 NE1 None
None
Juk_relx_mol1 6 TRP 109 HE1 None
None
Juk_relx_mol1 7 ALA 114 N None
None
Juk_relx_mol1 7 ALA 119 H None
None
Juk_relx_mol1 8 GLU 124 N None
None
Juk_relx_mol1 8 GLU 133 H None
None
Juk_relx_mol1 9 ALA 139 N None
None
Juk_relx_mol1 9 ALA 144 H None
None
why i get no value for residues like 6, 7, 8 and 9?
Re: Relax finished with this message