Hi all,
I'am currently trying to install relax on my computer and I have some
difficulties for compiling the C modules. I've tried to manually
compile the modules but I failed... Notice that I use Enthough Python
Distribution.
Here is the output of the --info command:
[mlescanne@localhost ~/relax_disp]$ relax --info
relax repository checkout r20477
svn://svn.gna.org/svn/relax/branches/relax_disp
Molecular dynamics by NMR data analysis
Copyright (C) 2001-2006 Edward d'Auvergne
Copyright (C) 2006-2013 the relax development team
This is free software which you are welcome to modify and redistribute
under the conditions of the
GNU General Public License (GPL). This program, including all
modules, is licensed under the GPL
and comes with absolutely no warranty. For details type 'GPL' within
the relax prompt.
Assistance in using the relax prompt and scripting interface can be
accessed by typing 'help' within
the prompt.
ImportError: relaxation curve fitting is unavailable, the
corresponding C modules have not been compiled.
Processor fabric: Uni-processor.
Hardware information:
Machine: i686
Processor: i686
Endianness: little
Total RAM size: 1967 Mb
Total swap size: 4102 Mb
Operating system information:
System: Linux
Release: 2.6.30.10-105.2.23.fc11.i686.PAE
Version: #1 SMP Thu Feb 11 07:05:37 UTC 2010
GNU/Linux version: Fedora 11 Leonidas
Distribution: fedora 11 Leonidas
Full platform string:
Linux-2.6.30.10-105.2.23.fc11.i686.PAE-i686-with-fedora-11-Leonidas
Python information:
Architecture: 32bit ELF
Python version: 2.7.3
Python branch:
Python build: default, Apr 11 2012 18:02:54
Python compiler: GCC 4.1.2 20080704 (Red Hat 4.1.2-44)
Libc version: glibc 2.0
Python implementation: CPython
Python revision:
Python executable:
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/bin/python
Python flags: sys.flags(debug=0, py3k_warning=0,
division_warning=0, division_new=0, inspect=0, interactive=0,
optimize=0, dont_write_bytecode=0, no_user_site=0, no_site=0,
ignore_environment=0, tabcheck=0, verbose=0, unicode=0,
bytes_warning=0, hash_randomization=0)
Python float info:
sys.float_info(max=1.7976931348623157e+308, max_exp=1024,
max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021,
min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.220446049250313e-16,
radix=2, rounds=1)
Python module path:
['/data/people/mlescanne/fct_optimisation/relax/relax_disp',
'/data/soft/ccpnmr_2.1.3_1/ccpnmr2.1/python',
'/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python27.zip',
'/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7',
'/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/plat-linux2',
'/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/lib-tk',
'/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/lib-old',
'/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/lib-dynload',
'/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/site-packages',
'/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/site-packages/PIL']
Python packages and modules (most are optional):
Name Installed Version Path
minfx True 1.0.5
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/site-packages/minfx
bmrblib True 1.0.3
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/site-packages/bmrblib
numpy True 1.6.1
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/site-packages/numpy
scipy True 0.10.1
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/site-packages/scipy
wxPython True 2.8.10.1 (gtk2-unicode)
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/site-packages/wx
mpi4py False
epydoc False
optparse True 1.5.3
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/optparse.pyc
readline True
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/lib-dynload/readline.so
profile True
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/profile.pyc
bz2 True
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/lib-dynload/bz2.so
gzip True
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/gzip.pyc
io True
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/io.pyc
xml True 0.8.4 (internal)
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/xml/__init__.pyc
xml.dom.minidom True
/data/people/mlescanne/epd_free-7.3-2-rh5-x86/lib/python2.7/xml/dom/minidom.pyc
relax information:
Version: repository checkout r20477
svn://svn.gna.org/svn/relax/branches/relax_disp
Processor fabric: Uni-processor.
relax C modules:
Module Compiled File type Path
target_functions.relax_fit False
Here is the output when I type scons:
[mlescanne@localhost ~/relax_disp]$ scons
scons: Reading SConscript files ...
The dependency 'minfx' has not been installed (see
https://gna.org/projects/minfx/).
I you dealt with this kind of problem I would be interested in the way
you overcame it.
Regards,
Mathilde
relax installation with EPD