Re: Made a wiki page for a Tutorial for Relaxation dispersion analysis cpmg fixed time recorded on varian as fid interleaved -- August 27, 2013

Hi,

I'm guessing you mean the new wiki page at:

http://wiki.nmr-relax.com/Tutorial_for_Relaxation_dispersion_analysis_cpmg_fixed_time_recorded_on_varian_as_fid_interleaved_scripts

This is a clean and more permanent solution.  The links to the github
scripts can be kept if you would like to have easy to download copies
of the files.  Also, the section
http://wiki.nmr-relax.com/Tutorial_for_Relaxation_dispersion_analysis_cpmg_fixed_time_recorded_on_varian_as_fid_interleaved#Convert_all_.2A.ft2_files_to_ucsf_format.2C_so_they_can_be_opened_in_SPARKY
could be updated to have a link to the corresponding script on new
page - it has not been updated.

On a different topic, the
http://wiki.nmr-relax.com/Tutorial_for_Relaxation_dispersion_analysis_cpmg_fixed_time_recorded_on_varian_as_fid_interleaved#making_a_spin_file_from_SPARKY_list
section may only be short lived.  With the new peak list object design
in the relax library, it should be trivial to implement the reading of
spin sequence information through the current sequence.read user
function.

Regards,

Edward


On 27 August 2013 16:00, Troels Emtekær Linnet <tlinnet@xxxxxxxxx> wrote:

Now corrected. :-)

Is it better now?

:-)

Troels Emtekær Linnet


2013/8/27 Troels Emtekær Linnet <tlinnet@xxxxxxxxx>:

All-right.

I will de-couple scripts. :-)


For images:
http://en.wikipedia.org/wiki/Wikipedia:Picture_tutorial

Troels Emtekær Linnet


2013/8/27 Edward d'Auvergne <edward@xxxxxxxxxxxxx>:

Hi Troels,

For this relaxation dispersion tutorial for relax, I would suggest
including the contents of scripts such as the NMRPipe_to_Sparky.sh,
CPMG_1_sort_pseudo3D_initialize_files.sh, etc. files directly into the
relax wiki page
(http://wiki.nmr-relax.com/Tutorial_for_Relaxation_dispersion_analysis_cpmg_fixed_time_recorded_on_varian_as_fid_interleaved).
This will decouple the wiki page from the github infrastructure and
make the tutorial more future proof - for example in 25 years time if
you are no longer interested in relaxation dispersion and github is
replaced by something better, this wiki page will still be a usable
reference.

Another suggestion might be to have screenshots for each step of the
tutorial for the GUI section, with very small versions embedded in the
wiki page which can be clicked on for the full version. I'm not sure
how you would do that though. Maybe one of your students could take
screenshots as they are performing the analysis. I am yet to add GUI
screenshots to the dispersion chapter of the relax user manual (the
branch version, for example at
http://download.gna.org/relax/manual/relax_disp_manual.pdf), as I am
waiting for the branch to be completed and the graphical interface
finalised. I don't think we can share the screenshots between both as
many steps are skipped in your tutorial and replaced by scripts to
automatically set up the data pipe.

Regards,

Edward

On 27 August 2013 12:07, Troels Emtekær Linnet <tlinnet@xxxxxxxxx> wrote:

Hi relax users.

I made a wiki page for at Tutorial regarding:
Relaxation dispersion analysis cpmg fixed time recorded on varian as
fid interleaved

http://wiki.nmr-relax.com/Tutorial_for_Relaxation_dispersion_analysis_cpmg_fixed_time_recorded_on_varian_as_fid_interleaved

It is targeted new students in our lab, who can have a little trouble
handling linux.
It therefore contains some helper scripts, to help processing spectra.

Any comments would be appreciated. :-)

Troels Emtekær Linnet

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Re: Made a wiki page for a Tutorial for Relaxation dispersion analysis cpmg fixed time recorded on varian as fid interleaved

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