mailRe: How does the error intensity analysis handle both specification of baseplane RMSD and partly repeated spectrum?


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Posted by Edward d'Auvergne on September 12, 2014 - 14:40:
Hi Troels,

Currently you can only choose one technique or the other.  You will
see this in the algorithm for choosing between the different
techniques in the pipe_control.spectrum.error_analysis() function
(http://www.nmr-relax.com/api/3.3/pipe_control.spectrum-pysrc.html#error_analysis).
Replicates come first, if present, and that will be used for error.
This calls __errors_repl().  If no replicates exist, then either
__errors_height_no_repl() or __errors_vol_no_repl() are called.
Coming up with an algorithm that does a mixture of both will be
difficult.  And it will also be complicated to explain the behaviour
to the user, though that is currently done using printouts.

Regards,

Edward

On 12 September 2014 14:22, Troels Emtekær Linnet <tlinnet@xxxxxxxxxxxxx> 
wrote:
Dear Edward.

I was wondering how relax handles the error intensity analysis,
where one both specify the baseplane RMSD and and one also have partly
repeated spectrums?


For example you have recorded for 10 time series.

You measure the baseplane RMSD for each spectrum.

You have repeated spectrum 1,2 and 7,8.

You specify all this to relax.

Best
Troels

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