Hello Edward,
Thanks for the reply. I am trying to get hold of all the missing modules.
Once they are all at one place, I will put it into relax with his permission.
I had another small query. I was wondering if there was a possibility to
extract errors on the model free parameters within all the four diffusion
tensor models. I mean, normally, the MC simulations are performed once a
particular diffusion tensor is selected using the AIC. Is there a way to do
the this on rest of the tensor models as well, either before the AIC
selection or after it separately?
Regards,
Vineet
________________________________________
An: Panwalkar, Vineet
Cc: relax-users@xxxxxxx
Betreff: Re: error on the diffusion tensor parameters
Hi Vineet,
From the error message, the my_relax module is clearly a special
Python or relax module written by your former college. It is not part
of relax, so I can't help you much. You might be able to find it on
your system by typing:
$ locate my_relax.py
$ locate tensor_mc.py
The missing external module will have one of these names. If it is
tensor_mc.py, then this will be in the directory "my_relax/". All the
contents of that directory is then called a Python package, and you
will need all of it. I hope this information helps. It is a pity
your former college did not contribute it to relax so that I can help
you more.
Regards,
Edward
On 18 December 2014 at 15:36, Panwalkar, Vineet
<v.panwalkar@xxxxxxxxxxxxx> wrote:
Dear Edward,
Following is the error,
Traceback (most recent call last):
File
"/opt/scisoft64/usr/lib/python2.7/site-packages/relax/multi/processor.py",
line 494, in run
self.callback.init_master(self)
File
"/opt/scisoft64/usr/lib/python2.7/site-packages/relax/multi/__init__.py",
line 318, in default_init_master
self.master.run()
File "/opt/scisoft64/usr/lib/python2.7/site-packages/relax/relax.py",
line 199, in run
self.interpreter.run(self.script_file)
File
"/opt/scisoft64/usr/lib/python2.7/site-packages/relax/prompt/interpreter.py",
line 279, in run
return run_script(intro=self.__intro_string, local=locals(),
script_file=script_file, show_script=self.__show_script,
raise_relax_error=self.__raise_relax_error)
File
"/opt/scisoft64/usr/lib/python2.7/site-packages/relax/prompt/interpreter.py",
line 585, in run_script
return console.interact(intro, local, script_file,
show_script=show_script, raise_relax_error=raise_relax_error)
File
"/opt/scisoft64/usr/lib/python2.7/site-packages/relax/prompt/interpreter.py",
line 484, in interact_script
exec_script(script_file, local)
File
"/opt/scisoft64/usr/lib/python2.7/site-packages/relax/prompt/interpreter.py",
line 363, in exec_script
runpy.run_module(module, globals)
File "/opt/scisoft64/usr/lib/python2.7/runpy.py", line 180, in run_module
fname, loader, pkg_name)
File "/opt/scisoft64/usr/lib/python2.7/runpy.py", line 72, in _run_code
exec code in run_globals
File
"/home/vpan014/NMR_900_FZJ_data/Relax/Apo_structure1_09122014/run17_structure/relax_mc_difftensor_print_all.py",
line 11, in <module>
from my_relax.tensor_mc import Main, print_fancy, Out_tensor
ImportError: No module named my_relax.tensor_mc
I am checking with my former labmate who wrote the script regarding the
module as well.
I also had a question regarding possibility of performing Monte Carlo
simulations to get errors on the model free parameters within all the four
diffusion tensor models. I mean, normally, the MC simulations are performed
once a particular diffusion tensor is selected using the AIC. Is there a
way to do the simulations on rest of the tensor models as well?
Cheers,
Vineet
________________________________________
Hi Vineet,
Could you copy and paste the entire error? That would significantly
help working out what is happening, as it will indicate where the
error is happening. But if you search for the text "my_relax" or file
"my_relax.py", you will see that this has never existed in any version
of relax, from 2001 until now.
Regards,
Edward
_______________________________________________
On 18 December 2014 at 15:09, Panwalkar, Vineet
Hi all,
I have a script to calculate errors on the diffusion tensor parameters,
written by one of my former colleagues. It works well with relax v 3.2.3
however, in the version 3.3.3, it doesn't work and gives an error message
saying "ImportError: No module named my_relax.tensor_mc".
I was wondering if the module has been renamed/replaced to something else
or is this something entirely different.
Thanks,
Vineet
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AW: error on the diffusion tensor parameters