On 20 July 2016 at 16:02, Troels Emtekær Linnet <tlinnet@xxxxxxxxxxxxx> wrote:
Hi.
Did you compile relax yourself?
Try compiled version of relax.
Have you tried running the systemtests?
http://wiki.nmr-relax.com/Installation_test
It looks like you are running mpirun.
Try running without.
Or look here:
http://wiki.nmr-relax.com/Run_relax_at_Google_Cloud_Computing
http://wiki.nmr-relax.com/OpenMPI#Relax_In_multiprocessor_mode
2016-07-20 15:18 GMT+02:00 <aritrabej@xxxxxxxxxxx>:
Dear all,I am a new user of Relax and I am trying to perform ModelFree
calculation with a 207 residue protein using both fully automated and
manual protocol of Relax GUI mode. But every time the calculation is
stopped with a "bad_alloc" error. The details of the is as follows:
terminate called after throwing an instance of 'std::bad_alloc'what():
std::bad_alloc*** Process received signal ***Signal: Aborted (6)Signal
code:
(-6)[0x2e040c]/lib/libc.so.6(abort+0x17a)[0xb415ea]/usr/lib/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x167)[0x65c0397]/usr/lib/libstdc++.so.6(+0x57f226)[0x65be226]/usr/lib/libstdc++.so.6(+0x57f263)[0x65be263]/usr/lib/libstdc++.so.6(+0x57f3a2)[0x65be3a2]/usr/lib/libstdc++.so.6(_Znwj+0x87)[0x65be937]/usr/lib/libstdc++.so.6(_ZNSbIwSt11char_traitsIwESaIwEE4_Rep9_S_createEjjRKS1_+0x79)[0x65b35a9]/usr/lib/libstdc++.so.6(_ZNSbIwSt11char_traitsIwESaIwEE9_M_mutateEjjj+0x51)[0x65b5471]/usr/lib/libstdc++.so.6(_ZNSbIwSt11char_traitsIwESaIwEE15_M_replace_safeEjjPKwj+0x3b)[0x65b562b]/usr/lib/libstdc++.so.6(_ZNSbIwSt11char_traitsIwESaIwEE6assignEPKwj+0x5f)[0x65b56ef]/usr/local/lib/libwx_gtk2u_stc-3.0.so.0(+0x3a535)[0x1fc8535]/usr/local/lib/libwx_gtk2u_stc-3.0.so.0(+0x40714)[0x1fce714]/usr/local/lib/libwx_gtk2u_stc-3.0.so.0(+0x7c1bd)[0x200a1bd]/usr/local/lib/libwx_gtk2u_stc-3.0.so.0(+0x7c38f)[0x200a38f]/usr/local/lib/libwx_gtk2u_stc-3.0.so.0(+0x83a3f)[0x2011a3f]/usr/local/lib/libwx_gtk2u_stc-3.0.so.0(+0x98d24)[0x2026d24]/usr/local/lib/libwx_gtk2u_stc-3.0.so.0(+0x3f03e)[0x1fcd03e]/usr/local/lib/libwx_gtk2u_stc-3.0.so.0(_ZNK16wxStyledTextCtrl7SendMsgEiml+0x2f)[0x1fae5ff]/usr/local/lib/libwx_gtk2u_stc-3.0.so.0(_ZN16wxStyledTextCtrl17SetSelectionStartEi+0x34)[0x1fb0f34]/usr/local/lib/libwx_gtk2u_stc-3.0.so.0(+0x33dd4)[0x1fc1dd4]/usr/lib/python2.6/site-packages/wx-3.0-gtk2/wx/_core_.so(+0x10a489)[0x10b0489]/usr/lib/libpython2.6.so.1.0(PyCFunction_Call+0x148)[0x2d77218]/usr/lib/libpython2.6.so.1.0(PyEval_EvalFrameEx+0x499f)[0x2dd475f]/usr/lib/libpython2.6.so.1.0(PyEval_EvalCodeEx+0x85d)[0x2dd63fd]/usr/lib/libpython2.6.so.1.0(PyEval_EvalFrameEx+0x48de)[0x2dd469e]/usr/lib/libpython2.6.so.1.0(PyEval_EvalCodeEx+0x85d)[0x2dd63fd]/usr/lib/libpython2.6.so.1.0(PyEval_EvalFrameEx+0x48de)[0x2dd469e]/usr/lib/libpython2.6.so.1.0(PyEval_EvalCodeEx+0x85d)[0x2dd63fd]/usr/lib/libpython2.6.so.1.0[0x2d63397]***
End of error message
***--------------------------------------------------------------------------mpirun
noticed that process rank 0 with PID 15605 on node madhava exited on signal
6
(Aborted).--------------------------------------------------------------------------
So kindly suggest some details about the error and suggest specific hints
to resolve the problem.Thanks in advance.
Aritra BejDoctoral FellowCSIR - IICB
Hi Aritra,
Did you get a change to look at Troels' suggestions? Do you see this
error when you run the test suite? To me this looks like a faulty
installation of wxPython. These errors and the files listed have
nothing to do with relax. What is your output when you run:
$ relax -i
Can you run the wxPython demo or the wxPython tests to make sure this
is set up correctly?
Regards,
Edward
Re: Issue in ModelFree Calculation