Hi Troels,
Here is the output
source openmpi_test_install.sh
http://svn.gna.org/viewcvs/*checkout*/relax/trunk/devel_scripts/openmpi_test_install.sh
Source the commands with: source openmpi_test_install.sh
Then do: testopenmpi
function: Command not found.
This is functions to test openmpi, python and openmpi.
Shell is: /bin/tcsh
which mpirun
mpirun: Command not found.
module avail
------------------------ /usr/share/Modules/modulefiles
------------------------
dot module-git module-info modules null use.own
------------------------------- /etc/modulefiles
-------------------------------
mpi/mpich-x86_64 mpi/openmpi-x86_64 mpich-x86_64
lscpu
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
CPU(s): 8
On-line CPU(s) list: 0-7
Thread(s) per core: 2
Core(s) per socket: 4
Socket(s): 1
NUMA node(s): 1
Vendor ID: GenuineIntel
CPU family: 6
Model: 58
Model name: Intel(R) Core(TM) i7-3770S CPU @ 3.10GHz
Stepping: 9
CPU MHz: 3653.640
CPU max MHz: 3900.0000
CPU min MHz: 1600.0000
BogoMIPS: 6186.25
Virtualization: VT-x
L1d cache: 32K
L1i cache: 32K
L2 cache: 256K
L3 cache: 8192K
NUMA node0 CPU(s): 0-7
mpirun --version
mpirun: Command not found.
mpirun --report-bindings -np 2 echo "hello world"
mpirun: Command not found.
A=": Command not found.
A: Undefined variable.
The reason the mpi commands didn't work, is becaues openmpi was not
loaded. I modified your script (added: module load mpi/openmpi-x86_64) and
then got this output
source openmpi_test_install.sh
http://svn.gna.org/viewcvs/*checkout*/relax/trunk/devel_scripts/openmpi_test_install.sh
Source the commands with: source openmpi_test_install.sh
Then do: testopenmpi
function: Command not found.
This is functions to test openmpi, python and openmpi.
Shell is: /bin/tcsh
which mpirun
/usr/lib64/openmpi/bin/mpirun
module avail
------------------------------------ /usr/share/Modules/modulefiles
------------------------------------
dot module-git module-info modules null use.own
------------------------------------------- /etc/modulefiles
-------------------------------------------
mpi/mpich-x86_64 mpi/openmpi-x86_64 mpich-x86_64
lscpu
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
CPU(s): 8
On-line CPU(s) list: 0-7
Thread(s) per core: 2
Core(s) per socket: 4
Socket(s): 1
NUMA node(s): 1
Vendor ID: GenuineIntel
CPU family: 6
Model: 58
Model name: Intel(R) Core(TM) i7-3770S CPU @ 3.10GHz
Stepping: 9
CPU MHz: 3733.320
CPU max MHz: 3900.0000
CPU min MHz: 1600.0000
BogoMIPS: 6186.25
Virtualization: VT-x
L1d cache: 32K
L1i cache: 32K
L2 cache: 256K
L3 cache: 8192K
NUMA node0 CPU(s): 0-7
mpirun --version
mpirun (Open MPI) 1.7.3
Report bugs to http://www.open-mpi.org/community/help/
mpirun --report-bindings -np 2 echo "hello world"
hello world
hello world
A=": Command not found.
A: Undefined variable.
As to why the report bindings on python didn't work. I don't know what the
A command means, so I don't know what happened there.
Sincerely,
Sam
On Sun, Oct 2, 2016 at 4:16 PM, Troels Emtekær Linnet <tlinnet@xxxxxxxxxxxxx
wrote:
Hi Sam.
Can you try this in your terminal.
I am trying to write a script, which should check at users setup mpirun.
--
URL=http://svn.gna.org/viewcvs/*checkout*/relax/
trunk/devel_scripts/openmpi_test_install.sh
wget $URL
# Source functions
source openmpi_test_install.sh
testopenmpi
2016-10-01 0:22 GMT+02:00 Troels Emtekær Linnet <tlinnet@xxxxxxxxxxxxx>:
Hi Sam.
Can you try:
mpirun --version
Thanks
2016-10-01 0:00 GMT+02:00 Mahdi, Sam <sam.mahdi.846@xxxxxxxxxxx>:
Hi Troels,
Here is a list of the packages I got off of the fedora package list
Openmpi:
openmpi-1.7.3-1.fc.20(64-bit)
openmpi-devel-1.7.3-1.fc20(64bit)
pypar-openmpi-2.1.5_108_3.fc.20(64bit)
python3-mpi4py-1.3.1-1.fc20(64bit)
Mpi4py
mpi4py-common-1.3.1-1.fc20
mpi4py-mpich-1.3.1-1.fc20
mpi4py-openmpi-1.3.1-1.fc20
python3-mpi4py-mpich-1.3.1-1.fc20
python3-mpi4py-openmpi-1.3.1-1.fc20
Note: I now know the mpich is extra and pointless. I only use the
openmpi when I load my modules. I have not compiled or configured anything
with these packages. I just installed them directly from the package list.
If you need any more info on what is installed on these computers let me
know!
Sincerely,
Sam
On Fri, Sep 30, 2016 at 2:23 PM, Troels Emtekær Linnet <
tlinnet@xxxxxxxxxxxxx> wrote:
Hi Sam.
I am trying to setup myself on Google Cloud Platform.
Here I setting up for a Redhat 6 distro, in hope it gets close to
Fedora 20.
I am currently making a deployment script.
The process is written here:
http://wiki.nmr-relax.com/Run_relax_at_Google_Cloud_Computin
g#Install_packages_at_server
But that is a little old, since the configurations has changed a little
since 2015.
And the last deployment script is for Ubuntu.
Getting the packages right is a pain.... ;)
Let me return when I know some more.
2016-09-30 23:03 GMT+02:00 Mahdi, Sam <sam.mahdi.846@xxxxxxxxxxx>:
Hi Troels,
I attempted the full path
mpirun -np 5 ~/relax-4.0.2/relax --multi="mpi4py" -v
and still got the same result. No output.
Sincerely,
Sam
On Fri, Sep 30, 2016 at 11:43 AM, Troels Emtekær Linnet <
tlinnet@xxxxxxxxxxxxx> wrote:
Hi Sam.
Hm. Alright.
But to rule it out in my head, can you try this:
mpirun -np 5 /home/users/software/relax-4.0.2/relax --multi="mpi4py"
-v
Or similar destination path.
But please try the full path.
Best
Troels
2016-09-30 19:47 GMT+02:00 Mahdi, Sam <sam.mahdi.846@xxxxxxxxxxx>:
I get the same results with the full path mpirun -np 5
~/relax-4.0.2/relax --multi="mpi4py" -v
Still no output.
Sincerely,
Sam
On Fri, Sep 30, 2016 at 10:39 AM, Troels Emtekær Linnet <
tlinnet@xxxxxxxxxxxxx> wrote:
Sam.
All points to:
"./relax" is NOT calling relax in the current folder.
It is because the command "mpirun" is running it.
Please provide the FULL path to relax.
I think I have written this before. ;)
Best
Troels
2016-09-30 19:24 GMT+02:00 Mahdi, Sam <sam.mahdi.846@xxxxxxxxxxx>:
Sorry, you're right, I re-ran the mpirun -np 5 ./relax
--multi="mpi4py" -v
and got no output. So I'm just curious for the other computers I
download
openmpi in, just installing it and compiling it isn't enough?
There are
some configurations you have to make to have it run on relax?
Sincerely,
Sam
On Fri, Sep 30, 2016 at 10:17 AM, Edward d'Auvergne <
edward@xxxxxxxxxxxxx>
wrote:
On 30 September 2016 at 19:12, Mahdi, Sam <
sam.mahdi.846@xxxxxxxxxxx>
wrote:
Hi Edward,
So I ran the the mpirun commands you suggested. The echo world
works
fine. I
get the same results you did. For the relax one, this is the
output I
recieved
[~/relax-4.0.2]> mpirun -np 5 ./relax --multi="mpi4py" -v
relax 4.0.2
Usage: relax [options] [script_file]
RelaxError: incorrect number of arguments
Have a close look at my original text:
[edward@localhost ~]$ mpirun -np 5 /data/relax/tags/4.0.2/relax
--multi="mpi4py" -v
relax 4.0.2
[edward@localhost ~]$
Note how "relax 4.0.2" is on a different line - that is the relax
output, not the command line input. Try again without that text.
RelaxError: ambiguous option: --v (--verification-tests,
--version?)
This is because the double-dash to single-dash conversion is
only in
the HTML version of the relax manual, and not emails. Run
"relax -h"
to see a description of this option.
Also, the reason its ./relax is because I have relax 2.2.5
installed,
and I
have that set up as an Alias, so if I just type relax, it'll
open up
relax
2.2.5. So I went to the actual relax-4.0.2. directory instead
of
indicating
its path and just typed ./relax. (By I, I mean the
administrator of this
computer, I do not have root access to this computer).
You should set your alias to the relax-4.0.2 version instead.
The
2.2.5 version is very, very old, and many bugs have been fixed
since
then.
Regards,
Edward
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Re: Using multi-processor for model_free