Re: Error in setting up model free analysis -- February 21, 2017

On 21 February 2017 at 07:29, Ashish Sethi <ashish.sethi@xxxxxxxxxxxxxx> 
wrote:

Thanks Sam.



I did ignore the error message and run the model free analysis and I got 
the following errors:



Traceback (most recent call last):
  File "/usr/local/relax/gui/analyses/execute.py", line 87, in run
    self.run_analysis()
  File "/usr/local/relax/gui/analyses/auto_model_free.py", line 808, in 
run_analysis
    dauvergne_protocol.dAuvergne_protocol(pipe_name=self.data.pipe_name, 
pipe_bundle=self.data.pipe_bundle, results_dir=self.data.save_dir, 
diff_model=self.data.global_models, mf_models=self.data.mf_models, 
local_tm_models=self.data.local_tm_models, grid_inc=self.data.inc, 
diff_tensor_grid_inc=self.data.diff_tensor_grid_inc, 
mc_sim_num=self.data.mc_sim_num, max_iter=self.data.max_iter, 
conv_loop=self.data.conv_loop)
  File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 241, in 
__init__
    self.execute()
  File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 604, in 
execute
    self.interpreter.results.read(file='results', 
dir=self.results_dir+'local_tm'+sep+'aic')
  File "/usr/local/relax/prompt/uf_objects.py", line 221, in __call__
    self._backend(*new_args, **uf_kargs)
  File "/usr/local/relax/generic_fns/results.py", line 96, in read
    ds.from_xml(file, dir=dirname(file_path), pipe_to=pipes.cdp_name())
  File "/usr/local/relax/data/__init__.py", line 452, in from_xml
    self[pipe_to].from_xml(pipe_nodes[0], dir=dir, 
file_version=file_version)
  File "/usr/local/relax/data/pipe_container.py", line 255, in from_xml
    self.structure.from_xml(str_nodes[0], dir=dir, id=parser, 
file_version=file_version)
  File "/usr/local/relax/generic_fns/structure/api_base.py", line 296, in 
from_xml
    self.structural_data.from_xml(model_nodes, id=id, 
file_version=file_version)
  File "/usr/local/relax/generic_fns/structure/api_base.py", line 1223, in 
from_xml
    self[-1].mol.from_xml(mol_nodes, id=id, file_version=file_version)
  File "/usr/local/relax/generic_fns/structure/api_base.py", line 1441, in 
from_xml
    self[-1].from_xml(mol_node, file_version=file_version)
  File "/usr/local/relax/generic_fns/structure/internal.py", line 2607, in 
from_xml
    xml_to_object(mol_node, self, file_version=file_version)
  File "/usr/local/relax/data/relax_xml.py", line 277, in xml_to_object
    value[i] = packBytesAsPyFloat(ieee_value[i])
  File "/usr/local/relax/float.py", line 200, in packBytesAsPyFloat
    doubleString=pack('8B',*bytes)
error: pack expected 8 items for packing (got 571)



Can anyone suggest what is the problem ?


Hi Ashish,

Such an error message means that the relax results file is corrupted
somehow.  Maybe check that you haven't run out of hard disk space or
that there are no bad sectors on the hard disk.  You could also open
up the results_dir+local_tm/aic/results.bz2 file and see if that file
looks ok.  If there is nothing wrong with your hard disk, could you
open up a bug report at https://gna.org/bugs/?func=additem&group=relax
and attach the results.bz2 file causing the problem?  If you'd like to
keep your data private, try deleting residues from the XML file until
you only have 1 or 2 left, and use the state.load user function to
make sure that that exact "error: pack expected 8 items for packing
(got 571)" message is still present.

Regards,

Edward

Re: Error in setting up model free analysis

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