To do - dispersion features yet to be implemented
The capabilities of the relaxation dispersion analysis in relax is expansive but it cannot be called complete.
There are a number of features and models yet to be implemented.
Missing features include:
- The handling of off-resonance effects in the models of the numeric solution for CPMG-type data.
This is specifically the `NS CPMG 2-site 3D' and `NS CPMG 2-site star' models and their `* full' equivalents.
The necessary infrastructure is in place, but not activated yet (mainly due to a lack of synthetic data to test against).
Currently only the software CATIA can handle this effect.
- Multi-state data - the handling of data from two sets of peaks from the same spin system is not properly supported.
It is currently handled by assuming each state is a separate spin system but this means that
Δω,
ΔωH and related parameters are not shared as they should be.
- The van't Hoff analysis of multi-temperature dispersion data (see https://en.wikipedia.org/wiki/Van_%27t_Hoff_equation).
- The Korzhnev et al. (2005b) correction for constant-time
R1ρ experiments for the analytic models (
R1ρ =
- λ1 -1/Trelaxloga1, where a1 =
1 - pBcos2(θA - θB), and θA =
arctan(ω1/ωA) and θB =
arctan(ω1/ωB).
- Calculation of the dispersion α value from Millet et al. (2000).
- Support for CEST-type data.
- Offset support for the ground state chemical shift rather than the observed peak position.
This is really only needed for
R1ρ-type data.
If you would like one of these features, please contact the “nmr-relax-devel at lists.sourceforge.net” mailing list.
The most useful would be if you have synthetic data whereby you know what the true solution should be.
This can then be incorporated into a relax system test and the feature implemented to allow the test to pass.
Note that such data should never be emailed to a public mailing list!
Synthetic data, or experimental data, can be obtained from the literature.
Some of the missing models include:
- `TP04':
- The
R1ρ-type data Trott and Palmer (2004) N-site analytic equation for all time scales with parameters
{R1ρ',..., p1,..., pN,, k12,... k1N}.
- `*
R1ρ':
- All of the 3-site and N-site models as summarised in Table 1 of Palmer and Massi (2006).
- `BK13':
- The
R1ρ-type data Baldwin and Kay (2013) off-resonance 2-site equation for all time scales with parameters
{R1ρ',..., pA, Δω, kex}. For details and code, see the archived Gna! support request #3155.
- `BK13 full':
- The
R1ρ-type data full Baldwin and Kay (2013) off-resonance 2-site equation for all time scales with parameters
{R1ρA', R1ρB',..., pA, Δω, kex}. For details and code, see the archived Gna! support request #3155.
Information for how these can be added is given in the next section.
The relax user manual (PDF), created 2020-08-26.