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Class Hierarchy
prompt.angles.Angles
generic_fns.angles.Angles
test_suite.angles.Angles
dx.base_map.Base_Map
dx.isosurface_3D.Iso3D
colour.Colour
specific_fns.base_class.Common_functions
specific_fns.consistency_tests.Consistency_tests
specific_fns.jw_mapping.Jw_mapping
specific_fns.model_free.Model_free
specific_fns.relax_fit.Relax_fit
minimise.base_classes.Conjugate_gradient
minimise.fletcher_reeves_cg.Fletcher_reeves
minimise.hestenes_stiefel_cg.Hestenes_stiefel
minimise.polak_ribiere_cg.Polak_ribiere
minimise.polak_ribiere_plus_cg.Polak_ribiere_plus
maths_fns.consistency_tests.Consistency
prompt.consistency_tests.Consistency_tests
test_suite.consistency_tests.Consistent
minimise.constraint_linear.Constraint_linear
generic_fns.dasha.Dasha
prompt.dasha.Dasha
data.Data
maths_fns.consistency_tests.Data
maths_fns.mf.Data
maths_fns.jw_mapping.Data
test_suite.diffusion_tensor.Diffusion_tensor
prompt.diffusion_tensor.Diffusion_tensor
generic_fns.diffusion_tensor.Diffusion_tensor
data.Element
data.DiffTensorElement
thread_classes.ThreadData
generic_fns.eliminate.Eliminate
prompt.eliminate.Eliminate
docs.latex.fetch_docstrings.Fetch_docstrings
generic_fns.fix.Fix
prompt.fix.Fix
prompt.gpl.GPL
test_suite.generic.Generic
generic_fns.main.Generic
generic_fns.grace.Grace
prompt.grace.Grace
minimise.base_classes.Hessian_mods
minimise.dogleg.Dogleg
minimise.exact_trust_region.Exact_trust_region
minimise.newton.Newton
minimise.dogleg.Dogleg
minimise.exact_trust_region.Exact_trust_region
minimise.steihaug_cg.Steihaug
specific_fns.hybrid.Hybrid
io.IO
prompt.init_data.Init_data
generic_fns.intensity.Intensity
prompt.interpreter.Interpreter
test_suite.jw_mapping.Jw
prompt.jw_mapping.Jw_mapping
prompt.command.Lh
minimise.base_classes.Line_search
minimise.bfgs.Bfgs
minimise.dogleg.Dogleg
minimise.exact_trust_region.Exact_trust_region
minimise.coordinate_descent.Coordinate_descent
minimise.fletcher_reeves_cg.Fletcher_reeves
minimise.hestenes_stiefel_cg.Hestenes_stiefel
minimise.ncg.Ncg
minimise.newton.Newton
minimise.dogleg.Dogleg
minimise.exact_trust_region.Exact_trust_region
minimise.steihaug_cg.Steihaug
minimise.polak_ribiere_cg.Polak_ribiere
minimise.polak_ribiere_plus_cg.Polak_ribiere_plus
minimise.steepest_descent.Steepest_descent
prompt.command.Ll
prompt.command.Ls
sconstruct.Main (script)
maths_fns.jw_mapping.Mapping
test_suite.model_free.Mf
maths_fns.mf.Mf
minimise.base_classes.Min
minimise.bfgs.Bfgs
minimise.dogleg.Dogleg
minimise.exact_trust_region.Exact_trust_region
minimise.cauchy_point.Cauchy_point
minimise.coordinate_descent.Coordinate_descent
minimise.dogleg.Dogleg
minimise.exact_trust_region.Exact_trust_region
minimise.fletcher_reeves_cg.Fletcher_reeves
minimise.hestenes_stiefel_cg.Hestenes_stiefel
minimise.levenberg_marquardt.Levenberg_marquardt
minimise.method_of_multipliers.Method_of_multipliers
minimise.ncg.Ncg
minimise.newton.Newton
minimise.dogleg.Dogleg
minimise.exact_trust_region.Exact_trust_region
minimise.steihaug_cg.Steihaug
minimise.polak_ribiere_cg.Polak_ribiere
minimise.polak_ribiere_plus_cg.Polak_ribiere_plus
minimise.simplex.Simplex
minimise.steepest_descent.Steepest_descent
minimise.steihaug_cg.Steihaug
prompt.minimisation.Minimisation
generic_fns.minimise.Minimise
prompt.model_free.Model_free
generic_fns.model_selection.Model_selection
prompt.model_selection.Modsel
test_suite.model_selection.Modsel
generic_fns.molmol.Molmol
prompt.molmol.Molmol
specific_fns.model_free.Molmol
generic_fns.monte_carlo.Monte_carlo
prompt.monte_carlo.Monte_carlo
prompt.noe.Noe
specific_fns.noe.Noe
generic_fns.nuclei.Nuclei
prompt.nuclei.Nuclei
prompt.dx.OpenDX
dx.opendx.OpenDX
optparse.OptionContainer
:
Abstract base class.
generic_fns.pdb.PDB
prompt.pdb.PDB
prompt.palmer.Palmer
generic_fns.palmer.Palmer
popen2.Popen3
:
Class representing a child process.
processes.RelaxPopen3
relax.Relax (script)
errors.RelaxErrors
thread_classes.RelaxParentThread
thread_classes.RelaxHostParentThread
generic_fns.minimise.RelaxMinParentThread
errors.RelaxWarnings
prompt.relax_data.Relax_data
prompt.relax_fit.Relax_fit
test_suite.relax_fit.Relax_fit
prompt.results.Results
generic_fns.results.Results
prompt.run.Run
test_suite.run_create.Run_create
generic_fns.runs.Runs
specific_fns.relax_data.Rx_data
prompt.select.Select
generic_fns.selection.Selection
test_suite.sequence.Sequence
prompt.sequence.Sequence
generic_fns.sequence.Sequence
specific_fns.main.Specific
specific_fns.specific_setup.Specific_setup
io.SplitIO
generic_fns.state.State
prompt.state.State
prompt.tab_completion.Tab_completion
test_suite.test_suite.Test_suite
thread_classes.Threading
prompt.thread.Threading
minimise.base_classes.Trust_region
minimise.cauchy_point.Cauchy_point
minimise.dogleg.Dogleg
minimise.exact_trust_region.Exact_trust_region
minimise.steihaug_cg.Steihaug
prompt.unselect.Unselect
generic_fns.value.Value
prompt.value.Value
prompt.view.View
prompt.vmd.Vmd
generic_fns.vmd.Vmd
prompt.interpreter._Exit
prompt.help._Helper
prompt.help._Helper_python
object
:
The most base type
exceptions.BaseException
:
Common base class for all exceptions
exceptions.Exception
:
Common base class for all non-exit exceptions.
errors.RelaxErrors.BaseError
errors.RelaxWarnings.BaseWarning
errors.RelaxWarnings.RelaxNoAtomWarning
errors.RelaxWarnings.RelaxNoPDBFileWarning
errors.RelaxWarnings.RelaxWarning
errors.RelaxWarnings.RelaxZeroVectorWarning
errors.RelaxErrors.RelaxArgNotInListError
errors.RelaxErrors.RelaxBinError
errors.RelaxErrors.RelaxDiffSeqError
errors.RelaxErrors.RelaxDirError
errors.RelaxErrors.RelaxError
errors.RelaxErrors.RelaxFault
errors.RelaxErrors.RelaxFileEmptyError
errors.RelaxErrors.RelaxFileError
errors.RelaxErrors.RelaxFileOverwriteError
errors.RelaxErrors.RelaxFloatError
errors.RelaxErrors.RelaxFuncSetupError
errors.RelaxErrors.RelaxFunctionError
errors.RelaxErrors.RelaxInfError
errors.RelaxErrors.RelaxIntError
errors.RelaxErrors.RelaxIntListIntError
errors.RelaxErrors.RelaxIntStrError
errors.RelaxErrors.RelaxInvalidColourError
errors.RelaxErrors.RelaxInvalidDataError
errors.RelaxErrors.RelaxInvalidError
errors.RelaxErrors.RelaxLenError
errors.RelaxErrors.RelaxListError
errors.RelaxErrors.RelaxListFloatError
errors.RelaxErrors.RelaxListIntError
errors.RelaxErrors.RelaxListNumError
errors.RelaxErrors.RelaxListStrError
errors.RelaxErrors.RelaxMfError
errors.RelaxErrors.RelaxMissingBinaryError
errors.RelaxErrors.RelaxNaNError
errors.RelaxErrors.RelaxNoInPathError
errors.RelaxErrors.RelaxNoModelError
errors.RelaxErrors.RelaxNoPdbChainError
errors.RelaxErrors.RelaxNoPdbError
errors.RelaxErrors.RelaxNoResError
errors.RelaxErrors.RelaxNoRiError
errors.RelaxErrors.RelaxNoRunError
errors.RelaxErrors.RelaxNoSequenceError
errors.RelaxErrors.RelaxNoSimError
errors.RelaxErrors.RelaxNoTensorError
errors.RelaxErrors.RelaxNoValueError
errors.RelaxErrors.RelaxNoVectorsError
errors.RelaxErrors.RelaxNonExecError
errors.RelaxErrors.RelaxNoneError
errors.RelaxErrors.RelaxNoneFloatError
errors.RelaxErrors.RelaxNoneFloatListError
errors.RelaxErrors.RelaxNoneIntError
errors.RelaxErrors.RelaxNoneIntStrError
errors.RelaxErrors.RelaxNoneListError
errors.RelaxErrors.RelaxNoneNumError
errors.RelaxErrors.RelaxNoneStrError
errors.RelaxErrors.RelaxNoneStrListError
errors.RelaxErrors.RelaxNoneTupleError
errors.RelaxErrors.RelaxNucleusError
errors.RelaxErrors.RelaxNumError
errors.RelaxErrors.RelaxNumTupleError
errors.RelaxErrors.RelaxPdbError
errors.RelaxErrors.RelaxPdbLoadError
errors.RelaxErrors.RelaxProgError
errors.RelaxErrors.RelaxProgFailError
errors.RelaxErrors.RelaxRegExpError
errors.RelaxErrors.RelaxRiError
errors.RelaxErrors.RelaxRunError
errors.RelaxErrors.RelaxSequenceError
errors.RelaxErrors.RelaxStrError
errors.RelaxErrors.RelaxStrListStrError
errors.RelaxErrors.RelaxStyleError
errors.RelaxErrors.RelaxTensorError
errors.RelaxErrors.RelaxTupleError
errors.RelaxErrors.RelaxUnknownDataTypeError
errors.RelaxErrors.RelaxUnknownParamCombError
errors.RelaxErrors.RelaxUnknownParamError
errors.RelaxErrors.RelaxValueError
exceptions.Warning
:
Base class for warning categories.
errors.RelaxWarnings.BaseWarning
errors.RelaxWarnings.RelaxNoAtomWarning
errors.RelaxWarnings.RelaxNoPDBFileWarning
errors.RelaxWarnings.RelaxWarning
errors.RelaxWarnings.RelaxZeroVectorWarning
threading._Verbose
threading.Thread
thread_classes.RelaxKillThread
thread_classes.RelaxResultsThread
thread_classes.RelaxThread
thread_classes.RelaxHostThread
generic_fns.minimise.RelaxMinimiseThread
dict
:
dict() -> new empty dictionary.
data.Residue
data.SpecificData
data.DiffTensorData
list
:
list() -> new list list(sequence) -> new list initialized from sequence's items
data.ResidueList
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