Source Code for Module test_suite.system_tests.model_elimination

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 2  #                                                                             # 
 3  # Copyright (C) 2006-2013 Edward d'Auvergne                                   # 
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21   
22  # Python module imports. 
23  from os import sep 
24   
25  # relax module imports. 
26  from data_store import Relax_data_store; ds = Relax_data_store() 
27  from pipe_control.mol_res_spin import return_spin 
28  from status import Status; status = Status() 
29  from test_suite.system_tests.base_classes import SystemTestCase 
30   
31   
32 -class Modelim(SystemTestCase): 
33      """Class for testing model selection.""" 
34   
35 -    def setUp(self): 
36          """Set up for these system tests.""" 
37   
38          # Create a model-free data pipe. 
39          self.interpreter.pipe.create('elim', 'mf') 
40   
41   
42 -    def test_te_200ns(self): 
43          """Test the elimination of a model-free model with te = 200 ns.""" 
44   
45          # Read a results file. 
46          self.interpreter.results.read(file='final_results_trunc_1.3_v2', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP') 
47   
48          # Set the te value for residue 11 Leu to 200 ns. 
49          self.interpreter.value.set(200*1e-9, 'te', spin_id=":11") 
50   
51          # Model elimination. 
52          self.interpreter.eliminate() 
53   
54          # Checks. 
55          self.assert_(return_spin(':9@N').select) 
56          self.assert_(return_spin(':10@N').select) 
57          self.assert_(not return_spin(':11@N').select) 
58          self.assert_(return_spin(':12@N').select) 
59   
60   
61 -    def test_tm_51ns(self): 
62          """Test the elimination of a model-free model with the local tm = 51 ns.""" 
63   
64          # Execute the script. 
65          self.script_exec(status.install_path + sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'local_tm_model_elimination.py') 
66   
67          # Checks. 
68          self.assert_(return_spin(':13').select) 
69          self.assert_(return_spin(':14').select) 
70          self.assert_(not return_spin(':15').select) 
71          self.assert_(return_spin(':16').select) 
72