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Identifier Index

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A

AA_CODES (in lib.sequence)	add_item() (in SpinList)	api_relax_fit (in specific_analyses.relax_fit.uf)
aa_codes_three_to_one() (in lib.sequence)	add_item() (in ModelList)	App (in gui)
abort() (in Mpi4py_processor)	add_item() (in MolList)	append() (in DiffTensorSimList)
abort() (in Processor)	add_item_list_element() (in Desc_container)	Application_callback (in multi)
about (in gui)	add_keyarg() (in Uf_container)	apply() (in Interpreter)
About_base (in gui.about)	add_list() (in Sequence_window)	ARCH (in test_suite.system_tests.frame_order)
About_relax (in gui.about)	add_list() (in Sequence_window_2D)	ARCH (in test_suite.system_tests.model_free)
about_relax() (in Main)	add_list_element() (in Desc_container)	are_bonded() (in Internal)
About_window (in gui.analyses.auto_model_free)	add_logo() (in Pipe_editor)	are_bonded_index() (in Internal)
abstract (in Bieri11)	add_min() (in Optimisation_settings)	are_mf_params_set() (in specific_analyses.model_free.parameters)
abstract (in Delaglio95)	add_model() (in Internal)	are_spins_named() (in pipe_control.mol_res_spin)
abstract (in LipariSzabo82b)	add_model() (in pipe_control.structure.main)	areUnordered() (in lib.float)
abstract (in dAuvergneGooley03)	add_mol() (in Internal_selection)	arg_check (in lib)
abstract (in dAuvergneGooley06)	add_molecule() (in Internal)	args_generic() (in Setup)
abstract (in dAuvergneGooley07)	add_offset() (in Spectra_list)	arguments() (in Relax)
abstract (in dAuvergneGooley08a)	add_page() (in Wiz_window)	ARRAY (in lib.errors)
abstract (in dAuvergneGooley08b)	add_paragraph() (in Desc_container)	ARRAY_FLOAT (in lib.errors)
acquire() (in Exec_lock)	add_pipe() (in Export_bmrb_window)	ARRAY_INT (in lib.errors)
acquire() (in Relax_lock)	add_pivots() (in specific_analyses.frame_order.geometric)	ARRAY_NUM (in lib.errors)
action_bmrb_citation() (in Citations)	add_prompt() (in Desc_container)	art_spacing (in Wiz_page)
action_bmrb_script() (in Scripts)	add_relax_logo() (in Controller)	assemble_atomic_coordinates() (in lib.structure.internal.coordinates)
action_bmrb_software() (in Software)	add_result_file() (in pipe_control.result_files)	assemble_coord_array() (in lib.structure.internal.coordinates)
action_bmrb_software_select() (in Software)	add_rotors() (in specific_analyses.frame_order.geometric)	assemble_data() (in Auto_model_free)
action_bmrb_thiol_state() (in Molecule)	add_row() (in Table)	assemble_data() (in Auto_noe)
action_cancel() (in Export_bmrb_window)	add_sheet() (in Internal)	assemble_data() (in Auto_relax_disp)
action_export() (in Export_bmrb_window)	add_sheet() (in pipe_control.structure.main)	assemble_data() (in Auto_rx)
action_export_bmrb() (in Main)	add_shell() (in Prompt)	assemble_data() (in pipe_control.plotting)
action_molecule_molecule_copy() (in Mol_res_spin_tree)	add_spectrum_id() (in pipe_control.spectrum)	assemble_data_scatter() (in pipe_control.plotting)
action_molecule_molecule_delete() (in Mol_res_spin_tree)	add_spin_control() (in Base_analysis)	assemble_data_seq_series() (in pipe_control.plotting)
action_molecule_molecule_deselect() (in Mol_res_spin_tree)	add_spin_systems() (in Base_analysis)	assemble_data_seq_value() (in pipe_control.plotting)
action_molecule_molecule_name() (in Mol_res_spin_tree)	add_start_screen() (in Main)	assemble_data_series_series() (in pipe_control.plotting)
action_molecule_molecule_select() (in Mol_res_spin_tree)	add_static_text() (in Base_analysis)	assemble_param_names() (in specific_analyses.model_free.parameters)
action_molecule_molecule_type() (in Mol_res_spin_tree)	add_subsubtitle() (in Base_analysis)	assemble_param_vector() (in specific_analyses.frame_order.parameters)
action_molecule_name() (in Molecule)	add_subtitle() (in Base_analysis)	assemble_param_vector() (in specific_analyses.model_free.parameters)
action_molecule_residue_create() (in Mol_res_spin_tree)	add_table() (in Pipe_editor)	assemble_param_vector() (in specific_analyses.n_state_model.parameters)
action_molecule_type() (in Molecule)	add_table() (in Uf_tables)	assemble_param_vector() (in specific_analyses.relax_disp.parameters)
action_preview() (in Export_bmrb_window)	add_table() (in Desc_container)	assemble_param_vector() (in specific_analyses.relax_fit.parameters)
action_relax_data_delete() (in Relax_data_list)	add_tag_categories() (in ChemShiftAnisotropySaveframe)	assemble_param_vector() (in Test_cr72_full_cluster_one_field)
action_relax_data_display() (in Relax_data_list)	add_tag_categories() (in ChemShiftAnisotropySaveframe_v3_1)	assemble_param_vector() (in Test_cr72_full_cluster_three_fields)
action_relax_data_display() (in Relax_data_meta_list)	add_tag_categories() (in EntitySaveframe)	assemble_scaling_matrix() (in pipe_control.minimise)
action_relax_data_peak_intensity_type() (in Relax_data_list)	add_tag_categories() (in EntitySaveframe_v2_1)	assemble_structural_coordinates() (in pipe_control.structure.main)
action_relax_data_peak_intensity_type() (in Relax_data_meta_list)	add_tag_categories() (in EntitySaveframe_v3_1)	assemble_structural_objects() (in pipe_control.structure.main)
action_relax_data_temp_calibration() (in Relax_data_list)	add_tag_categories() (in CitationsSaveframe)	assembly_supercategory (in bmrblib)
action_relax_data_temp_calibration() (in Relax_data_meta_list)	add_tag_categories() (in CitationsSaveframe_v3_1)	assert_on_master() (in Mpi4py_processor)
action_relax_data_temp_control() (in Relax_data_list)	add_tag_categories() (in ExperimentSaveframe)	assert_on_master() (in Processor)
action_relax_data_temp_control() (in Relax_data_meta_list)	add_tag_categories() (in ExperimentSaveframe_v3_1)	assert_on_master() (in Uni_processor)
action_relax_data_type() (in Relax_data_list)	add_tag_categories() (in MethodSaveframe)	AssertionError
action_relax_disp_cpmg_setup() (in Spectra_list)	add_tag_categories() (in MethodSaveframe_v3_1)	Assignment (in lib.spectrum.objects)
action_relax_disp_exp_type() (in Spectra_list)	add_tag_categories() (in NMRSpectrometerSaveframe)	associate_auto() (in Pipe_editor)
action_relax_disp_relax_time() (in Spectra_list)	add_tag_categories() (in NMRSpectrometerSaveframe_v3_1)	atom() (in lib.structure.pdb_read)
action_relax_disp_spin_lock_field() (in Spectra_list)	add_tag_categories() (in SampleConditionsSaveframe)	atom() (in lib.structure.pdb_write)
action_relax_disp_spin_lock_offset() (in Spectra_list)	add_tag_categories() (in SampleConditionsSaveframe_v2_1)	atom_add() (in MolContainer)
action_relax_fit_relax_time() (in Spectra_list)	add_tag_categories() (in SampleConditionsSaveframe_v3_1)	atom_connect() (in MolContainer)
action_residue_residue_copy() (in Mol_res_spin_tree)	add_tag_categories() (in SoftwareSaveframe)	atom_loop() (in Internal)
action_residue_residue_delete() (in Mol_res_spin_tree)	add_tag_categories() (in SoftwareSaveframe_v3_1)	atomic_fluctuations() (in pipe_control.structure.main)
action_residue_residue_deselect() (in Mol_res_spin_tree)	add_tag_categories() (in AutoRelaxationSaveframe)	atomic_mass() (in Periodic_table)
action_residue_residue_name() (in Mol_res_spin_tree)	add_tag_categories() (in AutoRelaxationSaveframe_v3_1)	atomic_rmsd() (in lib.structure.statistics)
action_residue_residue_number() (in Mol_res_spin_tree)	add_tag_categories() (in HeteronuclNOESaveframe_v2_1)	atomic_weight() (in Periodic_table)
action_residue_residue_select() (in Mol_res_spin_tree)	add_tag_categories() (in HeteronuclNOESaveframe_v3_1)	attach_protons() (in pipe_control.sequence)
action_residue_spin_add() (in Mol_res_spin_tree)	add_tag_categories() (in HeteronuclT1Saveframe_v2_1)	attrnames() (in Lister)
action_residue_spin_create_pseudo() (in Mol_res_spin_tree)	add_tag_categories() (in HeteronuclT1Saveframe_v3_1)	author (in Bieri11)
action_root_molecule_create() (in Mol_res_spin_tree)	add_tag_categories() (in HeteronuclT2Saveframe_v2_1)	author (in Clore90)
action_spectrometer_frequency() (in Relax_data_list)	add_tag_categories() (in HeteronuclT2Saveframe_v3_1)	author (in Delaglio95)
action_spectrometer_frq() (in Spectra_list)	add_tag_categories() (in TensorSaveframe)	author (in GoddardKneller)
action_spectrum_baseplane_rmsd() (in Spectra_list)	add_tag_categories() (in ModelFreeSaveframe)	author (in LipariSzabo82a)
action_spectrum_delete() (in Spectra_list)	add_tag_categories() (in ModelFreeSaveframe_v3_1)	author (in LipariSzabo82b)
action_spectrum_error_analysis() (in Spectra_list)	add_text() (in Controller)	author (in Ref)
action_spectrum_integration_points() (in Spectra_list)	add_text_control() (in Base_analysis)	author (in dAuvergne06)
action_spectrum_replicated() (in Spectra_list)	add_title() (in Base_analysis)	author (in dAuvergneGooley03)
action_spin_spin_copy() (in Mol_res_spin_tree)	add_titles() (in specific_analyses.frame_order.geometric)	author (in dAuvergneGooley06)
action_spin_spin_delete() (in Mol_res_spin_tree)	add_to_queue() (in Multi_processor)	author (in dAuvergneGooley07)
action_spin_spin_deselect() (in Mol_res_spin_tree)	add_to_queue() (in Processor)	author (in dAuvergneGooley08a)
action_spin_spin_element() (in Mol_res_spin_tree)	add_to_queue() (in Uni_processor)	author (in dAuvergneGooley08b)
action_spin_spin_name() (in Mol_res_spin_tree)	add_uf() (in Uf_info)	author2 (in Bieri11)
action_spin_spin_number() (in Mol_res_spin_tree)	add_values() (in Auto_model_free)	author2 (in Delaglio95)
action_spin_spin_select() (in Mol_res_spin_tree)	add_verbatim() (in Desc_container)	author2 (in GoddardKneller)
action_state_save() (in Main)	addError() (in RelaxTestResult)	author2 (in Ref)
action_state_save_as() (in Main)	addFailure() (in RelaxTestResult)	author2 (in dAuvergne06)
activate() (in Auto_model_free)	address (in Clore90)	author2 (in dAuvergneGooley03)
activate() (in Auto_noe)	addSuccess() (in RelaxTestResult)	author2 (in dAuvergneGooley06)
activate() (in Auto_relax_disp)	aic() (in lib.model_selection)	author2 (in dAuvergneGooley07)
activate() (in Auto_rx)	aic() (in pipe_control.statistics)	author2 (in dAuvergneGooley08a)
activate() (in Pipe_editor)	aicc() (in lib.model_selection)	author2 (in dAuvergneGooley08b)
activate() (in Results_viewer)	align_data_exists() (in pipe_control.align_tensor)	authoraddress (in Bieri11)
add() (in BaseSaveframe)	align_pairwise() (in lib.sequence_alignment.align_protein)	authoraddress (in Delaglio95)
add() (in MissingSaveframe)	align_protein (in lib.sequence_alignment)	authoraddress (in LipariSzabo82a)
add() (in TagTranslationTable)	align_tensor (in data_store)	authoraddress (in LipariSzabo82b)
add() (in Relaxation_v2_1)	align_tensor (in pipe_control)	authoraddress (in dAuvergneGooley03)
add() (in Relaxation_v3_1)	align_tensor (in test_suite.system_tests)	authoraddress (in dAuvergneGooley06)
add() (in Relax_data_store)	Align_tensor (in test_suite.system_tests.align_tensor)	authoraddress (in dAuvergneGooley07)
add() (in Analyses)	align_tensor (in user_functions)	authoraddress (in dAuvergneGooley08a)
add() (in Sequence_alignments)	Align_tensor_base_class (in test_suite.unit_tests.align_tensor_testing_base)	authoraddress (in dAuvergneGooley08b)
add() (in DCSection)	align_tensor_testing_base (in test_suite.unit_tests)	auto_analyses
add() (in Peak_list)	Alignment (in data_store.seq_align)	Auto_analysis (in status)
add() (in Slave_storage_command)	alignment (in lib)	auto_model_free (in gui.analyses)
add_artwork() (in New_analysis_page)	alignment_tensor (in lib.alignment)	Auto_model_free (in gui.analyses.auto_model_free)
add_artwork() (in Wiz_page)	AlignTensorData (in data_store.align_tensor)	auto_noe (in gui.analyses)
add_atom() (in Internal)	AlignTensorList (in data_store.align_tensor)	Auto_noe (in gui.analyses.auto_noe)
add_atom() (in Internal_selection)	AlignTensorSimList (in data_store.align_tensor)	auto_r1 (in gui.analyses)
add_atom() (in pipe_control.structure.main)	all_errors() (in lib.errors)	Auto_r1 (in gui.analyses.auto_r1)
add_axes() (in specific_analyses.frame_order.geometric)	all_tensors_fixed() (in pipe_control.align_tensor)	auto_r2 (in gui.analyses)
add_border() (in gui.misc)	AllChecks (in bmrblib.pystarlib.FileTest)	Auto_r2 (in gui.analyses.auto_r2)
add_button_open() (in Base_analysis)	AllChecks (in bmrblib.pystarlib.SaveFrameTest)	auto_relax_disp (in gui.analyses)
add_buttons() (in Auto_relax_disp)	AllChecks (in bmrblib.pystarlib.TagTableTest)	Auto_relax_disp (in gui.analyses.auto_relax_disp)
add_buttons() (in Auto_rx)	AllChecks (in bmrblib.pystarlib.TextTest)	auto_relaxation (in bmrblib.kinetics)
add_buttons() (in New_analysis_page)	AllChecks (in bmrblib.pystarlib.UtilsTest)	auto_relaxation (in lib)
add_buttons() (in Base_list)	ALLOWED_MOL_TYPES (in pipe_control.mol_res_spin)	auto_relaxation_v3_1 (in bmrblib.kinetics)
add_buttons() (in Free_file_format_window)	AllRelaxErrors (in lib.errors)	Auto_rx (in gui.analyses.auto_rx_base)
add_buttons() (in Grid_base)	Analyses (in data_store.gui)	auto_rx_base (in gui.analyses)
add_buttons() (in Export_bmrb_window)	analyses (in gui)	autodetect_format() (in lib.spectrum.peak_list)
add_buttons() (in Selector_file_window)	Analysis_controller (in gui.analyses)	AutoRelaxation (in bmrblib.kinetics.auto_relaxation)
add_buttons() (in Sequence_window)	analysis_data_loop() (in Analysis_controller)	AutoRelaxation_v3_1 (in bmrblib.kinetics.auto_relaxation_v3_1)
add_buttons() (in Pipe_editor)	analysis_key() (in Controller)	AutoRelaxationExperiment (in bmrblib.kinetics.auto_relaxation)
add_centre() (in Free_file_format_window)	analysis_loop() (in Analysis_controller)	AutoRelaxationExperiment_v3_1 (in bmrblib.kinetics.auto_relaxation_v3_1)
add_citation() (in ExpInfo)	analysis_type (in Auto_noe)	AutoRelaxationList (in bmrblib.kinetics.auto_relaxation)
add_class() (in Uf_info)	analysis_type (in Auto_r1)	AutoRelaxationList_v3_1 (in bmrblib.kinetics.auto_relaxation_v3_1)
add_cones() (in specific_analyses.frame_order.geometric)	analysis_type (in Auto_r2)	AutoRelaxationSaveframe (in bmrblib.kinetics.auto_relaxation)
add_contents() (in Data_pipe_page)	analysis_type (in Auto_relax_disp)	AutoRelaxationSaveframe_v3_1 (in bmrblib.kinetics.auto_relaxation_v3_1)
add_contents() (in New_analysis_page)	analysis_type (in Auto_rx)	AutoRelaxationSoftware (in bmrblib.kinetics.auto_relaxation)
add_contents() (in Finish_page)	Analysis_wizard (in gui.analyses.wizard)	AutoRelaxationSoftware_v3_1 (in bmrblib.kinetics.auto_relaxation_v3_1)
add_contents() (in Load_method_page)	angle_diff_frame() (in pipe_control.angles)	ave_pcs_tensor() (in lib.alignment.pcs)
add_contents() (in Uf_page)	angle_upper_excluding_bound() (in specific_analyses.frame_order.parameter_object)	ave_pcs_tensor_ddeltaij_dAmn() (in lib.alignment.pcs)
add_contents() (in Spectral_error_type_page)	angles (in lib.geometry)	ave_pcs_tensor_ddeltaij_dc() (in lib.alignment.pcs)
add_contents() (in Wiz_page)	angles (in lib.structure)	ave_rdc_5D() (in lib.alignment.rdc)
add_coordinates() (in Internal)	angles (in pipe_control)	ave_rdc_tensor() (in lib.alignment.rdc)
add_desc() (in Uf_page)	angles (in test_suite.system_tests)	ave_rdc_tensor_dDij_dAmn() (in lib.alignment.rdc)
add_desc() (in Spectral_error_type_page)	Angles (in test_suite.system_tests.angles)	ave_rdc_tensor_pseudoatom() (in lib.alignment.rdc)
add_desc() (in Wiz_page)	angles (in user_functions)	ave_rdc_tensor_pseudoatom_dDij_dAmn() (in lib.alignment.rdc)
add_disp_point() (in Spectra_list)	angles_regular() (in lib.structure.angles)	average_intensity() (in specific_analyses.relax_disp.data)
add_element() (in Selector_file_window)	angles_uniform() (in lib.structure.angles)	average_position() (in specific_analyses.frame_order.geometric)
add_element() (in Sequence_window)	ansi (in lib)	average_structure() (in pipe_control.structure.main)
add_execute_analysis() (in Base_analysis)	api (in lib.plotting)	axis_alpha_upper() (in specific_analyses.frame_order.parameter_object)
add_exp_type() (in Spectra_list)	api (in specific_analyses)	axis_angle_to_euler_xyx() (in lib.geometry.rotations)
add_file_list() (in Selector_file_window)	api (in specific_analyses.consistency_tests)	axis_angle_to_euler_xyz() (in lib.geometry.rotations)
add_files() (in Results_viewer)	api (in specific_analyses.frame_order)	axis_angle_to_euler_xzx() (in lib.geometry.rotations)
add_frqs() (in Spectra_list)	api (in specific_analyses.jw_mapping)	axis_angle_to_euler_xzy() (in lib.geometry.rotations)
add_gauge() (in Controller)	api (in specific_analyses.model_free)	axis_angle_to_euler_yxy() (in lib.geometry.rotations)
add_grid() (in Optimisation_settings)	api (in specific_analyses.n_state_model)	axis_angle_to_euler_yxz() (in lib.geometry.rotations)
add_grid() (in Grid_base)	api (in specific_analyses.noe)	axis_angle_to_euler_yzx() (in lib.geometry.rotations)
add_header() (in Export_bmrb_window)	api (in specific_analyses.relax_disp)	axis_angle_to_euler_yzy() (in lib.geometry.rotations)
add_headings() (in Table)	api (in specific_analyses.relax_fit)	axis_angle_to_euler_zxy() (in lib.geometry.rotations)
add_helix() (in Internal)	api_base (in specific_analyses)	axis_angle_to_euler_zxz() (in lib.geometry.rotations)
add_helix() (in pipe_control.structure.main)	API_base (in specific_analyses.api_base)	axis_angle_to_euler_zyx() (in lib.geometry.rotations)
add_html() (in About_base)	api_common (in specific_analyses)	axis_angle_to_euler_zyz() (in lib.geometry.rotations)
add_item() (in AlignTensorList)	API_common (in specific_analyses.api_common)	axis_angle_to_quaternion() (in lib.geometry.rotations)
add_item() (in InteratomList)	api_model_free (in specific_analyses.model_free.back_compat)	axis_angle_to_R() (in lib.geometry.rotations)
add_item() (in MoleculeList)	api_model_free (in specific_analyses.model_free.uf)	axis_permutation_analysis() (in Frame_order_analysis)
add_item() (in ResidueList)	api_relax_disp (in specific_analyses.relax_disp.uf)	axis_setup() (in pipe_control.plotting)