Package user_functions

Package containing all of the user function details.

This package contains all information and details about user functions, from documentation to icons to be used in the GUI. This package contains a special data structure which will be used by the different UIs to automatically generate their interfaces to the user functions.

Submodules

• user_functions.align_tensor: The align_tensor user function definitions.
• user_functions.angles: The angles user function definitions.
• user_functions.bmrb: The bmrb user function definitions.
• user_functions.bruker: The bruker user function definitions for interfacing with the Bruker Dynamics Center.
• user_functions.chemical_shift: The chemical_shift user function definitions.
• user_functions.consistency_tests: The consistency_tests user function definitions.
• user_functions.dasha: The dasha user function definitions for controlling the Dasha model-free software.
• user_functions.data: Module containing the user function data singleton which stores all of the data.
• user_functions.deselect: The deselect user function definitions.
• user_functions.diffusion_tensor: The diffusion_tensor user function definitions.
• user_functions.domain: The domain user function definitions.
• user_functions.dx: The dx user function definitions for controlling the OpenDX visualisation software.
• user_functions.eliminate: The eliminate user function definitions for removing failed models.
• user_functions.error_analysis: The error_analysis user function definitions.
• user_functions.fix: The fix user function definitions.
• user_functions.frame_order: The frame_order user function definitions.
• user_functions.grace: The grace user function definitions for controlling the Grace data viewing software.
• user_functions.interatom: The interatom user function definitions.
• user_functions.j_coupling: The j_coupling user function definitions.
• user_functions.jw_mapping: The jw_mapping user function definitions for Reduced Spectral Density Mapping.
• user_functions.minimisation: The minimisation user function definitions.
• user_functions.model_free: The model_free user function definitions for model-free analysis.
• user_functions.model_selection: The model_selection user function definitions.
• user_functions.molecule: The molecule user function definitions.
• user_functions.molmol: The molmol user function definitions for interacting with Molmol.
• user_functions.monte_carlo: The monte_carlo user function definitions for Monte Carlo simulations.
• user_functions.n_state_model: The n_state_model user function definitions.
• user_functions.noe: The noe user function definitions.
• user_functions.objects: The module of all the objects used to hold the user function details.
• user_functions.palmer: The palmer user function definitions for controlling the Modelfree4 software.
• user_functions.paramag: The paramag user function definitions for paramagnetic related functions.
• user_functions.pcs: The pcs user function definitions.
• user_functions.pipe: The pipe user function definitions.
• user_functions.pymol_control: The pymol user function definitions for interacting with PyMOL.
• user_functions.rdc: The rdc user function definitions.
• user_functions.relax_data: The relax_data user function definitions.
• user_functions.relax_disp: The relax_disp user function definitions.
• user_functions.relax_fit: The relax_fit user function definitions.
• user_functions.reset: The reset user function definitions.
• user_functions.residue: The residue user function definitions.
• user_functions.results: The results user function definitions.
• user_functions.script: The script user function definitions.
• user_functions.select: The select user function definitions.
• user_functions.sequence: The sequence user function definitions.
• user_functions.spectrometer: The spectrometer user function definitions for loading spectrometer information.
• user_functions.spectrum: The spectrum user function definitions.
• user_functions.spin: The spin user function definitions.
• user_functions.state: The state user function definitions.
• user_functions.statistics: The statistics user function definitions.
• user_functions.structure: The structure user function definitions.
• user_functions.sys_info: The sys_info user function definitions.
• user_functions.value: The value user function definitions.
• user_functions.vmd: The vmd user function definitions for controlling VMD.
• user_functions.wildcards: Variables for the wxPython file selector wildcard filters.

Functions

initialise()
Initialise all of the user function definitions by importing then validating them.

Variables

uf_translation_table = {'calc': 'minimise.calculate', 'dipole_...

__package__ = 'user_functions'

Variables Details

uf_translation_table

Value:

{'calc': 'minimise.calculate',
 'dipole_pair.define': 'interatom.define',
 'dipole_pair.read_dist': 'interatom.read_dist',
 'dipole_pair.set_dist': 'interatom.set_dist',
 'dipole_pair.unit_vectors': 'interatom.unit_vectors',
 'exp_info.software_select': 'bmrb.software_select',
 'frq.set': 'spectrometer.frequency',
 'grid_search': 'minimise.grid_search',
...