Module variables

Variables for the relaxation dispersion specific analysis.

Variables

EXP_TYPE_CPMG_SQ = 'SQ CPMG'

EXP_TYPE_CPMG_DQ = 'DQ CPMG'

EXP_TYPE_CPMG_MQ = 'MQ CPMG'

EXP_TYPE_CPMG_ZQ = 'ZQ CPMG'

EXP_TYPE_CPMG_PROTON_SQ = '1H SQ CPMG'

EXP_TYPE_CPMG_PROTON_MQ = '1H MQ CPMG'

EXP_TYPE_CPMG_MMQ = 'CPMG: SQ, DQ, MQ, ZQ, 1H SQ, 1H MQ'

EXP_TYPE_NOREX = 'No Rex'

EXP_TYPE_R1RHO = 'R1rho'

EXP_TYPE_R2EFF = 'R2eff/R1rho'

EXP_TYPE_DESC_CPMG_SQ = 'the standard single quantum (SQ) CPMG...

EXP_TYPE_DESC_CPMG_DQ = 'the double quantum (DQ) CPMG-type exp...

EXP_TYPE_DESC_CPMG_MQ = 'the multiple quantum (MQ) CPMG-type e...

EXP_TYPE_DESC_CPMG_ZQ = 'the zero quantum (ZQ) CPMG-type exper...

EXP_TYPE_DESC_CPMG_PROTON_SQ = 'the 1H single quantum (SQ) CPM...

EXP_TYPE_DESC_CPMG_PROTON_MQ = 'the 1H multiple quantum (MQ) C...

EXP_TYPE_DESC_R1RHO = 'the R1rho-type experiment'

EXP_TYPE_LIST_CPMG = ['SQ CPMG', 'DQ CPMG', 'MQ CPMG', 'ZQ CPM...
The list of all dispersion experiment types for CPMG-type data.

EXP_TYPE_LIST_R1RHO = ['R1rho']
The list of all dispersion experiment types for R1rho-type data.

EXP_TYPE_LIST = ['SQ CPMG', 'DQ CPMG', 'MQ CPMG', 'ZQ CPMG', '...
The list of all dispersion experiment types.

EQ_ANALYTIC = 'analytic'

EQ_NUMERIC = 'numeric'

EQ_SILICO = 'silico'

PARAMS_R1 = ['r1']

PARAMS_R20 = ['r2', 'r2a', 'r2b']

PARAMS_GLOBAL = ['k_AB', 'k_AC', 'k_BC', 'kA', 'kB', 'kC', 'ke...

PARAMS_CHEM_SHIFT_DIFF = ['dw', 'dw_AB', 'dw_AC', 'dw_BC', 'pa...

PARAMS_CHEM_SHIFT_DIFF_MMQ = ['dwH', 'dwH_AB', 'dwH_AC', 'dwH_...

PARAMS_SPIN = ['r1', 'r2', 'r2a', 'r2b', 'dw', 'dw_AB', 'dw_AC...

MODEL_R2EFF = 'R2eff'

MODEL_DESC_R2EFF = 'The model for determining the R2eff/R1rho ...

MODEL_PARAMS_R2EFF = ['r2eff', 'i0']

MODEL_YEAR_R2EFF = 1950

MODEL_EXP_TYPE_R2EFF = 'R2eff/R1rho'

MODEL_SITES_R2EFF = None

MODEL_EQ_R2EFF = 'analytic'

MODEL_NOREX = 'No Rex'

MODEL_DESC_NOREX = 'The model for no chemical exchange relaxat...

MODEL_PARAMS_NOREX = ['r2']

MODEL_YEAR_NOREX = 1951

MODEL_EXP_TYPE_NOREX = 'No Rex'

MODEL_SITES_NOREX = 1

MODEL_EQ_NOREX = 'analytic'

MODEL_LM63 = 'LM63'

MODEL_DESC_LM63 = 'The Luz and Meiboom (1963) 2-site fast exch...

MODEL_PARAMS_LM63 = ['r2', 'phi_ex', 'kex']

MODEL_YEAR_LM63 = 1963

MODEL_EXP_TYPE_LM63 = 'SQ CPMG'

MODEL_SITES_LM63 = 2

MODEL_EQ_LM63 = 'analytic'

MODEL_LM63_3SITE = 'LM63 3-site'

MODEL_DESC_LM63_3SITE = 'The Luz and Meiboom (1963) 3-site fas...

MODEL_PARAMS_LM63_3SITE = ['r2', 'phi_ex_B', 'phi_ex_C', 'kB',...

MODEL_YEAR_LM63_3SITE = 1963

MODEL_EXP_TYPE_LM63_3SITE = 'SQ CPMG'

MODEL_SITES_LM63_3SITE = 3

MODEL_EQ_LM63_3SITE = 'analytic'

MODEL_CR72 = 'CR72'

MODEL_DESC_CR72 = 'The reduced Carver and Richards (1972) 2-si...

MODEL_PARAMS_CR72 = ['r2', 'pA', 'dw', 'kex']

MODEL_YEAR_CR72 = 1972

MODEL_EXP_TYPE_CR72 = 'SQ CPMG'

MODEL_SITES_CR72 = 2

MODEL_EQ_CR72 = 'analytic'

MODEL_CR72_FULL = 'CR72 full'

MODEL_DESC_CR72_FULL = 'The full Carver and Richards (1972) 2-...

MODEL_PARAMS_CR72_FULL = ['r2a', 'r2b', 'pA', 'dw', 'kex']

MODEL_YEAR_CR72_FULL = 1972

MODEL_EXP_TYPE_CR72_FULL = 'SQ CPMG'

MODEL_SITES_CR72_FULL = 2

MODEL_EQ_CR72_FULL = 'analytic'

MODEL_IT99 = 'IT99'

MODEL_DESC_IT99 = 'The Ishima and Torchia (1999) 2-site CPMG m...

MODEL_PARAMS_IT99 = ['r2', 'pA', 'dw', 'tex']

MODEL_YEAR_IT99 = 1999

MODEL_EXP_TYPE_IT99 = 'SQ CPMG'

MODEL_SITES_IT99 = 2

MODEL_EQ_IT99 = 'analytic'

MODEL_TSMFK01 = 'TSMFK01'

MODEL_DESC_TSMFK01 = 'The Tollinger et al. (2001) 2-site very-...

MODEL_PARAMS_TSMFK01 = ['r2a', 'dw', 'k_AB']

MODEL_YEAR_TSMFK01 = 2001

MODEL_EXP_TYPE_TSMFK01 = 'SQ CPMG'

MODEL_SITES_TSMFK01 = 2

MODEL_EQ_TSMFK01 = 'analytic'

MODEL_B14 = 'B14'

MODEL_DESC_B14 = 'The Baldwin (2014) 2-site CPMG exact solutio...

MODEL_PARAMS_B14 = ['r2', 'pA', 'dw', 'kex']

MODEL_YEAR_B14 = 2014

MODEL_EXP_TYPE_B14 = 'SQ CPMG'

MODEL_SITES_B14 = 2

MODEL_EQ_B14 = 'analytic'

MODEL_B14_FULL = 'B14 full'

MODEL_DESC_B14_FULL = 'The Baldwin (2014) 2-site CPMG exact so...

MODEL_PARAMS_B14_FULL = ['r2a', 'r2b', 'pA', 'dw', 'kex']

MODEL_YEAR_B14_FULL = 2014

MODEL_EXP_TYPE_B14_FULL = 'SQ CPMG'

MODEL_SITES_B14_FULL = 2

MODEL_EQ_B14_FULL = 'analytic'

MODEL_M61 = 'M61'

MODEL_DESC_M61 = 'The Meiboom (1961) on-resonance 2-site fast ...

MODEL_PARAMS_M61 = ['r2', 'phi_ex', 'kex']

MODEL_YEAR_M61 = 1961

MODEL_EXP_TYPE_M61 = 'R1rho'

MODEL_SITES_M61 = 2

MODEL_EQ_M61 = 'analytic'

MODEL_M61B = 'M61 skew'

MODEL_DESC_M61B = 'The Meiboom (1961) on-resonance 2-site mode...

MODEL_PARAMS_M61B = ['r2', 'pA', 'dw', 'kex']

MODEL_YEAR_M61B = 1961

MODEL_EXP_TYPE_M61B = 'R1rho'

MODEL_SITES_M61B = 2

MODEL_EQ_M61B = 'analytic'

MODEL_DPL94 = 'DPL94'
The R1rho 2-site fast exchange model of Davis, Perlman and London (1994).

MODEL_DESC_DPL94 = 'The Davis, Perlman and London (1994) exten...

MODEL_PARAMS_DPL94 = ['r2', 'phi_ex', 'kex']

MODEL_YEAR_DPL94 = 1994

MODEL_EXP_TYPE_DPL94 = 'R1rho'

MODEL_SITES_DPL94 = 2

MODEL_EQ_DPL94 = 'analytic'

MODEL_TP02 = 'TP02'

MODEL_DESC_TP02 = 'The Trott and Palmer (2002) off-resonance 2...

MODEL_PARAMS_TP02 = ['r2', 'pA', 'dw', 'kex']

MODEL_YEAR_TP02 = 2002

MODEL_EXP_TYPE_TP02 = 'R1rho'

MODEL_SITES_TP02 = 2

MODEL_EQ_TP02 = 'analytic'

MODEL_TAP03 = 'TAP03'

MODEL_DESC_TAP03 = 'The Trott, Abergel and Palmer (2003) off-r...

MODEL_PARAMS_TAP03 = ['r2', 'pA', 'dw', 'kex']

MODEL_YEAR_TAP03 = 2003

MODEL_EXP_TYPE_TAP03 = 'R1rho'

MODEL_SITES_TAP03 = 2

MODEL_EQ_TAP03 = 'analytic'

MODEL_MP05 = 'MP05'
The R1rho 2-site off-resonance exchange model of Miloushev and Palmer (2005).

MODEL_DESC_MP05 = 'The Miloushev and Palmer (2005) off-resonan...

MODEL_PARAMS_MP05 = ['r2', 'pA', 'dw', 'kex']

MODEL_YEAR_MP05 = 2005

MODEL_EXP_TYPE_MP05 = 'R1rho'

MODEL_SITES_MP05 = 2

MODEL_EQ_MP05 = 'analytic'

MODEL_NS_CPMG_2SITE_3D = 'NS CPMG 2-site 3D'

MODEL_DESC_NS_CPMG_2SITE_3D = 'The reduced numerical solution ...

MODEL_PARAMS_NS_CPMG_2SITE_3D = ['r2', 'pA', 'dw', 'kex']

MODEL_YEAR_NS_CPMG_2SITE_3D = 2004

MODEL_EXP_TYPE_NS_CPMG_2SITE_3D = 'SQ CPMG'

MODEL_SITES_NS_CPMG_2SITE_3D = 2

MODEL_EQ_NS_CPMG_2SITE_3D = 'numeric'

MODEL_NS_CPMG_2SITE_3D_FULL = 'NS CPMG 2-site 3D full'

MODEL_DESC_NS_CPMG_2SITE_3D_FULL = 'The full numerical solutio...

MODEL_PARAMS_NS_CPMG_2SITE_3D_FULL = ['r2a', 'r2b', 'pA', 'dw'...

MODEL_YEAR_NS_CPMG_2SITE_3D_FULL = 2004

MODEL_EXP_TYPE_NS_CPMG_2SITE_3D_FULL = 'SQ CPMG'

MODEL_SITES_NS_CPMG_2SITE_3D_FULL = 2

MODEL_EQ_NS_CPMG_2SITE_3D_FULL = 'numeric'

MODEL_NS_CPMG_2SITE_STAR = 'NS CPMG 2-site star'

MODEL_DESC_NS_CPMG_2SITE_STAR = 'The numerical reduced solutio...

MODEL_PARAMS_NS_CPMG_2SITE_STAR = ['r2', 'pA', 'dw', 'kex']

MODEL_YEAR_NS_CPMG_2SITE_STAR = 2004

MODEL_EXP_TYPE_NS_CPMG_2SITE_STAR = 'SQ CPMG'

MODEL_SITES_NS_CPMG_2SITE_STAR = 2

MODEL_EQ_NS_CPMG_2SITE_STAR = 'numeric'

MODEL_NS_CPMG_2SITE_STAR_FULL = 'NS CPMG 2-site star full'

MODEL_DESC_NS_CPMG_2SITE_STAR_FULL = 'The full numerical solut...

MODEL_PARAMS_NS_CPMG_2SITE_STAR_FULL = ['r2a', 'r2b', 'pA', 'd...

MODEL_YEAR_NS_CPMG_2SITE_STAR_FULL = 2004

MODEL_EXP_TYPE_NS_CPMG_2SITE_STAR_FULL = 'SQ CPMG'

MODEL_SITES_NS_CPMG_2SITE_STAR_FULL = 2

MODEL_EQ_NS_CPMG_2SITE_STAR_FULL = 'numeric'

MODEL_NS_CPMG_2SITE_EXPANDED = 'NS CPMG 2-site expanded'

MODEL_DESC_NS_CPMG_2SITE_EXPANDED = 'The numerical solution fo...

MODEL_PARAMS_NS_CPMG_2SITE_EXPANDED = ['r2', 'pA', 'dw', 'kex']

MODEL_YEAR_NS_CPMG_2SITE_EXPANDED = 2001

MODEL_EXP_TYPE_NS_CPMG_2SITE_EXPANDED = 'SQ CPMG'

MODEL_SITES_NS_CPMG_2SITE_EXPANDED = 2

MODEL_EQ_NS_CPMG_2SITE_EXPANDED = 'silico'

MODEL_NS_R1RHO_2SITE = 'NS R1rho 2-site'

MODEL_DESC_NS_R1RHO_2SITE = 'The reduced numerical solution fo...

MODEL_PARAMS_NS_R1RHO_2SITE = ['r2', 'pA', 'dw', 'kex']

MODEL_YEAR_NS_R1RHO_2SITE = 2005

MODEL_EXP_TYPE_NS_R1RHO_2SITE = 'R1rho'

MODEL_SITES_NS_R1RHO_2SITE = 2

MODEL_EQ_NS_R1RHO_2SITE = 'numeric'

MODEL_NS_R1RHO_3SITE = 'NS R1rho 3-site'

MODEL_DESC_NS_R1RHO_3SITE = 'The numerical solution for the 3-...

MODEL_PARAMS_NS_R1RHO_3SITE = ['r2', 'pA', 'dw_AB', 'kex_AB', ...

MODEL_YEAR_NS_R1RHO_3SITE = 2005

MODEL_EXP_TYPE_NS_R1RHO_3SITE = 'R1rho'

MODEL_SITES_NS_R1RHO_3SITE = 3

MODEL_EQ_NS_R1RHO_3SITE = 'numeric'

MODEL_NS_R1RHO_3SITE_LINEAR = 'NS R1rho 3-site linear'

MODEL_DESC_NS_R1RHO_3SITE_LINEAR = 'The numerical solution for...

MODEL_PARAMS_NS_R1RHO_3SITE_LINEAR = ['r2', 'pA', 'dw_AB', 'ke...

MODEL_YEAR_NS_R1RHO_3SITE_LINEAR = 2005

MODEL_EXP_TYPE_NS_R1RHO_3SITE_LINEAR = 'R1rho'

MODEL_SITES_NS_R1RHO_3SITE_LINEAR = 3

MODEL_EQ_NS_R1RHO_3SITE_LINEAR = 'numeric'

MODEL_MMQ_CR72 = 'MMQ CR72'

MODEL_DESC_MMQ_CR72 = 'The Carver and Richards (1972) 2-site m...

MODEL_PARAMS_MMQ_CR72 = ['r2', 'pA', 'dw', 'dwH', 'kex']

MODEL_YEAR_MMQ_CR72 = 2004

MODEL_EXP_TYPE_MMQ_CR72 = 'CPMG: SQ, DQ, MQ, ZQ, 1H SQ, 1H MQ'

MODEL_SITES_MMQ_CR72 = 2

MODEL_EQ_MMQ_CR72 = 'analytic'

MODEL_NS_MMQ_2SITE = 'NS MMQ 2-site'

MODEL_DESC_NS_MMQ_2SITE = 'The reduced numerical solution for ...

MODEL_PARAMS_NS_MMQ_2SITE = ['r2', 'pA', 'dw', 'dwH', 'kex']

MODEL_YEAR_NS_MMQ_2SITE = 2005

MODEL_EXP_TYPE_NS_MMQ_2SITE = 'CPMG: SQ, DQ, MQ, ZQ, 1H SQ, 1H...

MODEL_SITES_NS_MMQ_2SITE = 2

MODEL_EQ_NS_MMQ_2SITE = 'numeric'

MODEL_NS_MMQ_3SITE = 'NS MMQ 3-site'

MODEL_DESC_NS_MMQ_3SITE = 'The numerical solution for the 3-si...

MODEL_PARAMS_NS_MMQ_3SITE = ['r2', 'pA', 'dw_AB', 'dwH_AB', 'k...

MODEL_YEAR_NS_MMQ_3SITE = 2005

MODEL_EXP_TYPE_NS_MMQ_3SITE = 'CPMG: SQ, DQ, MQ, ZQ, 1H SQ, 1H...

MODEL_SITES_NS_MMQ_3SITE = 3

MODEL_EQ_NS_MMQ_3SITE = 'numeric'

MODEL_NS_MMQ_3SITE_LINEAR = 'NS MMQ 3-site linear'

MODEL_DESC_NS_MMQ_3SITE_LINEAR = 'The numerical solution for t...

MODEL_PARAMS_NS_MMQ_3SITE_LINEAR = ['r2', 'pA', 'dw_AB', 'dwH_...

MODEL_YEAR_NS_MMQ_3SITE_LINEAR = 2005

MODEL_EXP_TYPE_NS_MMQ_3SITE_LINEAR = 'CPMG: SQ, DQ, MQ, ZQ, 1H...

MODEL_SITES_NS_MMQ_3SITE_LINEAR = 3

MODEL_EQ_NS_MMQ_3SITE_LINEAR = 'numeric'

MODEL_LIST_ANALYTIC_CPMG = ['LM63', 'LM63 3-site', 'CR72', 'CR...
The list of all analytic CPMG models.

MODEL_LIST_NUMERIC_CPMG = ['NS CPMG 2-site 3D', 'NS CPMG 2-sit...
The list of all numeric CPMG models.

MODEL_LIST_CPMG_ONLY = ['LM63', 'LM63 3-site', 'CR72', 'CR72 f...
The list of all dispersion models specifically for CPMG-type experiments (excluding the R2eff model and model 'No Rex').

MODEL_LIST_CPMG = ['No Rex', 'LM63', 'LM63 3-site', 'CR72', 'C...
The list of all dispersion models specifically for CPMG-type experiments (excluding the R2eff model).

MODEL_LIST_CPMG_FULL = ['R2eff', 'No Rex', 'LM63', 'LM63 3-sit...
The list of the R2eff model together with all dispersion models specifically for CPMG-type experiments.

MODEL_LIST_ANALYTIC_CPMG_MMQ = ['MMQ CR72']
The list of all numeric MMQ CPMG models.

MODEL_LIST_NUMERIC_CPMG_MMQ = ['NS MMQ 2-site', 'NS MMQ 3-site...
The list of all numeric MMQ CPMG models.

MODEL_LIST_MMQ = ['MMQ CR72', 'NS MMQ 2-site', 'NS MMQ 3-site'...
The list of all dispersion models specifically for MMQ CPMG-type experiments.

MODEL_LIST_MQ_CPMG = ['No Rex', 'MMQ CR72', 'NS MMQ 2-site', '...
The list of all dispersion models specifically for MQ CPMG-type experiments (excluding the R2eff model).

MODEL_LIST_MQ_CPMG_FULL = ['R2eff', 'No Rex', 'MMQ CR72', 'NS ...
The list of the R2eff model together with all dispersion models specifically for MQ CPMG-type experiments.

MODEL_LIST_R1RHO_ON_RES = ['M61', 'M61 skew']
The list of all dispersion models specifically for R1rho-type on-resonance experiments (excluding the R2eff model and model 'No Rex').

MODEL_LIST_ANALYTIC_R1RHO = ['DPL94', 'TP02', 'TAP03', 'MP05']
The list of all dispersion models specifically for analytical R1rho-type experiments which use R1 in their equations (excluding the R2eff model and model 'No Rex').

MODEL_LIST_NUMERIC_R1RHO = ['NS R1rho 2-site', 'NS R1rho 3-sit...
The list of all dispersion models specifically for numeric R1rho-type experiments which use R1 in their equations (excluding the R2eff model and model 'No Rex').

MODEL_LIST_R1RHO_OFF_RES = ['No Rex', 'DPL94', 'TP02', 'TAP03'...
The list of all dispersion models specifically for R1rho-type experiments which use R1 in their equations (excluding the R2eff model and model 'No Rex').

MODEL_LIST_R1RHO = ['No Rex', 'M61', 'M61 skew', 'DPL94', 'TP0...
The list of all dispersion models specifically for R1rho-type experiments (excluding the R2eff model).

MODEL_LIST_R1RHO_FULL = ['R2eff', 'No Rex', 'M61', 'M61 skew',...
The list of the R2eff model together with all dispersion models specifically for R1rho-type experiments.

MODEL_LIST_ANALYTIC = ['LM63', 'LM63 3-site', 'CR72', 'CR72 fu...
The list of all analytic models.

MODEL_LIST_NUMERIC = ['NS CPMG 2-site 3D', 'NS CPMG 2-site 3D ...
The list of all numeric models.

MODEL_LIST_DISP = ['No Rex', 'LM63', 'LM63 3-site', 'CR72', 'C...
The list of all dispersion models (excluding the R2eff model).

MODEL_LIST_FULL = ['R2eff', 'No Rex', 'LM63', 'LM63 3-site', '...
The list of the R2eff model together with all dispersion models.

MODEL_LIST_INV_RELAX_TIMES = ['B14', 'B14 full', 'MMQ CR72', '...
The inverted relaxation delay

MODEL_LIST_R20B = ['B14 full', 'CR72 full', 'NS CPMG 2-site 3D...
Models using R20B.

MODEL_LIST_DW_MIX_DOUBLE = ['LM63 3-site', 'MMQ CR72', 'NS MMQ...
Models using parameters with mixed dw, and has two variables.

MODEL_LIST_DW_MIX_QUADRUPLE = ['NS MMQ 3-site', 'NS MMQ 3-site...
Models using parameters with mixed dw, and has four variables.

MODEL_LIST_FIT_R1 = ['No Rex', 'DPL94', 'TP02', 'TAP03', 'MP05...

MODEL_NEST_CPMG = 'CR72'

MODEL_NEST_MMQ = 'MMQ CR72'

MODEL_NEST_R1RHO = 'MP05'

MODEL_LIST_NEST = ['CR72', 'MMQ CR72', 'MP05']

MODEL_NEST_LIST_CPMG = ['NS CPMG 2-site expanded', 'NS CPMG 2-...

MODEL_NEST_LIST_CPMG_R20B = ['NS CPMG 2-site 3D full', 'NS CPM...

MODEL_NEST_LIST_R1RHO_2SITE = ['MP05', 'TAP03', 'TP02']

MODEL_NEST_LIST_R1RHO_3SITE = ['NS R1rho 3-site linear', 'NS R...

MODEL_NEST_LIST_MMQ_2SITE = ['NS MMQ 2-site', 'MMQ CR72']

MODEL_NEST_LIST_MMQ_3SITE = ['NS MMQ 3-site', 'NS MMQ 3-site l...

MODEL_NEST_R2EFF = None

MODEL_NEST_NOREX = None

MODEL_NEST_LM63 = None

MODEL_NEST_LM63_3SITE = ['LM63']

MODEL_NEST_CR72 = ['NS CPMG 2-site expanded', 'NS CPMG 2-site ...

MODEL_NEST_CR72_FULL = ['NS CPMG 2-site 3D full', 'NS CPMG 2-s...

MODEL_NEST_IT99 = None

MODEL_NEST_TSMFK01 = None

MODEL_NEST_B14 = ['NS CPMG 2-site expanded', 'NS CPMG 2-site 3...

MODEL_NEST_B14_FULL = ['NS CPMG 2-site 3D full', 'NS CPMG 2-si...

MODEL_NEST_M61 = None

MODEL_NEST_M61B = None

MODEL_NEST_DPL94 = None

MODEL_NEST_TP02 = ['MP05', 'TAP03', 'TP02']

MODEL_NEST_TAP03 = ['MP05', 'TAP03', 'TP02']

MODEL_NEST_MP05 = ['MP05', 'TAP03', 'TP02']

MODEL_NEST_NS_CPMG_2SITE_3D = ['NS CPMG 2-site expanded', 'NS ...

MODEL_NEST_NS_CPMG_2SITE_3D_FULL = ['NS CPMG 2-site 3D full', ...

MODEL_NEST_NS_CPMG_2SITE_STAR = ['NS CPMG 2-site expanded', 'N...

MODEL_NEST_NS_CPMG_2SITE_STAR_FULL = ['NS CPMG 2-site 3D full'...

MODEL_NEST_NS_CPMG_2SITE_EXPANDED = ['NS CPMG 2-site expanded'...

MODEL_NEST_NS_R1RHO_2SITE = ['MP05', 'TAP03', 'TP02']

MODEL_NEST_NS_R1RHO_3SITE = ['NS R1rho 3-site linear', 'NS R1r...

MODEL_NEST_NS_R1RHO_3SITE_LINEAR = ['NS R1rho 3-site linear', ...

MODEL_NEST_MMQ_CR72 = ['NS MMQ 2-site', 'MMQ CR72']

MODEL_NEST_NS_MMQ_2SITE = ['NS MMQ 2-site', 'MMQ CR72']

MODEL_NEST_NS_MMQ_3SITE = ['NS MMQ 3-site', 'NS MMQ 3-site lin...

MODEL_NEST_NS_MMQ_3SITE_LINEAR = ['NS MMQ 3-site', 'NS MMQ 3-s...

MODEL_DESC = {'B14': 'The Baldwin (2014) 2-site CPMG exact sol...

MODEL_PARAMS = {'B14': ['r2', 'pA', 'dw', 'kex'], 'B14 full': ...

MODEL_YEAR = {'B14': 2014, 'B14 full': 2014, 'CR72': 1972, 'CR...

MODEL_EXP_TYPE = {'B14': 'SQ CPMG', 'B14 full': 'SQ CPMG', 'CR...

MODEL_SITES = {'B14': 2, 'B14 full': 2, 'CR72': 2, 'CR72 full'...

MODEL_EQ = {'B14': 'analytic', 'B14 full': 'analytic', 'CR72':...

MODEL_NEST = {'B14': ['NS CPMG 2-site expanded', 'NS CPMG 2-si...

__package__ = None

Variables Details

EXP_TYPE_DESC_CPMG_SQ

Value:

'the standard single quantum (SQ) CPMG-type experiment'

EXP_TYPE_DESC_CPMG_DQ

Value:

'the double quantum (DQ) CPMG-type experiment'

EXP_TYPE_DESC_CPMG_MQ

Value:

'the multiple quantum (MQ) CPMG-type experiment'

EXP_TYPE_DESC_CPMG_ZQ

Value:

'the zero quantum (ZQ) CPMG-type experiment'

EXP_TYPE_DESC_CPMG_PROTON_SQ

Value:

'the 1H single quantum (SQ) CPMG-type experiment'

EXP_TYPE_DESC_CPMG_PROTON_MQ

Value:

'the 1H multiple quantum (MQ) CPMG-type experiment'

EXP_TYPE_LIST_CPMG

The list of all dispersion experiment types for CPMG-type data.

Value:

['SQ CPMG',
 'DQ CPMG',
 'MQ CPMG',
 'ZQ CPMG',
 '1H SQ CPMG',
 '1H MQ CPMG']

EXP_TYPE_LIST

The list of all dispersion experiment types.

Value:

['SQ CPMG',
 'DQ CPMG',
 'MQ CPMG',
 'ZQ CPMG',
 '1H SQ CPMG',
 '1H MQ CPMG',
 'R1rho']

PARAMS_GLOBAL

Value:

['k_AB',
 'k_AC',
 'k_BC',
 'kA',
 'kB',
 'kC',
 'kex',
 'kex_AB',
...

PARAMS_CHEM_SHIFT_DIFF

Value:

['dw',
 'dw_AB',
 'dw_AC',
 'dw_BC',
 'padw2',
 'phi_ex',
 'phi_ex_A',
 'phi_ex_B',
...

PARAMS_CHEM_SHIFT_DIFF_MMQ

Value:

['dwH', 'dwH_AB', 'dwH_AC', 'dwH_BC']

PARAMS_SPIN

Value:

['r1',
 'r2',
 'r2a',
 'r2b',
 'dw',
 'dw_AB',
 'dw_AC',
 'dw_BC',
...

MODEL_DESC_R2EFF

Value:

'The model for determining the R2eff/R1rho values from peak intensitie
s.'

MODEL_DESC_NOREX

Value:

'The model for no chemical exchange relaxation.'

MODEL_DESC_LM63

Value:

'The Luz and Meiboom (1963) 2-site fast exchange model for SQ-CPMG exp
eriments.'

MODEL_DESC_LM63_3SITE

Value:

'The Luz and Meiboom (1963) 3-site fast exchange model for SQ-CPMG exp
eriments.'

MODEL_PARAMS_LM63_3SITE

Value:

['r2', 'phi_ex_B', 'phi_ex_C', 'kB', 'kC']

MODEL_DESC_CR72

Value:

'The reduced Carver and Richards (1972) 2-site model for all time scal
es for SQ-CPMG experiments, whereby the simplification R20A = R20B is 
assumed.'

MODEL_DESC_CR72_FULL

Value:

'The full Carver and Richards (1972) 2-site model for all time scales 
for SQ-CPMG experiments.'

MODEL_DESC_IT99

Value:

'The Ishima and Torchia (1999) 2-site CPMG model for all time scales f
or SQ-CPMG experiments, with skewed populations (pA >> pB).'

MODEL_DESC_TSMFK01

Value:

'The Tollinger et al. (2001) 2-site very-slow exchange model for SQ-CP
MG experiments.'

MODEL_DESC_B14

Value:

'The Baldwin (2014) 2-site CPMG exact solution model for all time scal
es for SQ-CPMG experiments, whereby the simplification R20A = R20B is 
assumed.'

MODEL_DESC_B14_FULL

Value:

'The Baldwin (2014) 2-site CPMG exact solution model for all time scal
es for SQ-CPMG experiments.'

MODEL_DESC_M61

Value:

'The Meiboom (1961) on-resonance 2-site fast exchange model for R1rho-
type experiments.'

MODEL_DESC_M61B

Value:

'The Meiboom (1961) on-resonance 2-site model for R1rho-type experimen
ts, with skewed populations (pA >> pB).'

MODEL_DESC_DPL94

Value:

'The Davis, Perlman and London (1994) extension of the Meiboom (1961) 
model for off-resonance data.'

MODEL_DESC_TP02

Value:

'The Trott and Palmer (2002) off-resonance 2-site model for R1rho-type
 experiments.'

MODEL_DESC_TAP03

Value:

'The Trott, Abergel and Palmer (2003) off-resonance 2-site model for R
1rho-type experiments.'

MODEL_DESC_MP05

Value:

'The Miloushev and Palmer (2005) off-resonance 2-site model for R1rho-
type experiments.'

MODEL_DESC_NS_CPMG_2SITE_3D

Value:

'The reduced numerical solution for the 2-site Bloch-McConnell equatio
ns using 3D magnetisation vectors for SQ CPMG experiments, whereby the
 simplification R20A = R20B is assumed.'

MODEL_DESC_NS_CPMG_2SITE_3D_FULL

Value:

'The full numerical solution for the 2-site Bloch-McConnell equations 
using 3D magnetisation vectors for SQ CPMG experiments.'

MODEL_PARAMS_NS_CPMG_2SITE_3D_FULL

Value:

['r2a', 'r2b', 'pA', 'dw', 'kex']

MODEL_DESC_NS_CPMG_2SITE_STAR

Value:

'The numerical reduced solution for the 2-site Bloch-McConnell equatio
ns using complex conjugate matrices for SQ CPMG experiments, whereby t
he simplification R20A = R20B is assumed.'

MODEL_DESC_NS_CPMG_2SITE_STAR_FULL

Value:

'The full numerical solution for the 2-site Bloch-McConnell equations 
using complex conjugate matrices for SQ CPMG experiments.'

MODEL_PARAMS_NS_CPMG_2SITE_STAR_FULL

Value:

['r2a', 'r2b', 'pA', 'dw', 'kex']

MODEL_DESC_NS_CPMG_2SITE_EXPANDED

Value:

'The numerical solution for the 2-site Bloch-McConnell equations for S
Q CPMG experiments, expanded using Maple by Nikolai Skrynnikov.'

MODEL_DESC_NS_R1RHO_2SITE

Value:

'The reduced numerical solution for the 2-site Bloch-McConnell equatio
ns using 3D magnetisation vectors for R1rho-type experiments, whereby 
the simplification R20A = R20B is assumed.'

MODEL_DESC_NS_R1RHO_3SITE

Value:

'The numerical solution for the 3-site Bloch-McConnell equations using
 3D magnetisation vectors for R1rho-type experiments, whereby the simp
lification R20A = R20B = R20C is assumed.'

MODEL_PARAMS_NS_R1RHO_3SITE

Value:

['r2', 'pA', 'dw_AB', 'kex_AB', 'pB', 'dw_BC', 'kex_BC', 'kex_AC']

MODEL_DESC_NS_R1RHO_3SITE_LINEAR

Value:

'The numerical solution for the 3-site Bloch-McConnell equations using
 3D magnetisation vectors for R1rho-type experiments, linearised with 
kAC = kCA = 0 and whereby the simplification R20A = R20B = R20C is ass
umed.'

MODEL_PARAMS_NS_R1RHO_3SITE_LINEAR

Value:

['r2', 'pA', 'dw_AB', 'kex_AB', 'pB', 'dw_BC', 'kex_BC']

MODEL_DESC_MMQ_CR72

Value:

'The Carver and Richards (1972) 2-site model for all time scales expan
ded for MMQ CPMG experiments by Korzhnev et al., 2004.'

MODEL_DESC_NS_MMQ_2SITE

Value:

'The reduced numerical solution for the 2-site Bloch-McConnell equatio
ns for MMQ CPMG experiments, whereby the simplification R20A = R20B is
 assumed.'

MODEL_EXP_TYPE_NS_MMQ_2SITE

Value:

'CPMG: SQ, DQ, MQ, ZQ, 1H SQ, 1H MQ'

MODEL_DESC_NS_MMQ_3SITE

Value:

'The numerical solution for the 3-site Bloch-McConnell equations for M
MQ CPMG experiments, whereby the simplification R20A = R20B = R20C is 
assumed.'

MODEL_PARAMS_NS_MMQ_3SITE

Value:

['r2',
 'pA',
 'dw_AB',
 'dwH_AB',
 'kex_AB',
 'pB',
 'dw_BC',
 'dwH_BC',
...

MODEL_EXP_TYPE_NS_MMQ_3SITE

Value:

'CPMG: SQ, DQ, MQ, ZQ, 1H SQ, 1H MQ'

MODEL_DESC_NS_MMQ_3SITE_LINEAR

Value:

'The numerical solution for the 3-site Bloch-McConnell equations for M
MQ CPMG experiments, linearised with kAC = kCA = 0 and whereby the sim
plification R20A = R20B = R20C is assumed.'

MODEL_PARAMS_NS_MMQ_3SITE_LINEAR

Value:

['r2',
 'pA',
 'dw_AB',
 'dwH_AB',
 'kex_AB',
 'pB',
 'dw_BC',
 'dwH_BC',
...

MODEL_EXP_TYPE_NS_MMQ_3SITE_LINEAR

Value:

'CPMG: SQ, DQ, MQ, ZQ, 1H SQ, 1H MQ'

MODEL_LIST_ANALYTIC_CPMG

The list of all analytic CPMG models.

Value:

['LM63',
 'LM63 3-site',
 'CR72',
 'CR72 full',
 'IT99',
 'TSMFK01',
 'B14',
 'B14 full']

MODEL_LIST_NUMERIC_CPMG

The list of all numeric CPMG models.

Value:

['NS CPMG 2-site 3D',
 'NS CPMG 2-site 3D full',
 'NS CPMG 2-site star',
 'NS CPMG 2-site star full',
 'NS CPMG 2-site expanded']

MODEL_LIST_CPMG_ONLY

The list of all dispersion models specifically for CPMG-type experiments (excluding the R2eff model and model 'No Rex').

Value:

['LM63',
 'LM63 3-site',
 'CR72',
 'CR72 full',
 'IT99',
 'TSMFK01',
 'B14',
 'B14 full',
...

MODEL_LIST_CPMG

The list of all dispersion models specifically for CPMG-type experiments (excluding the R2eff model).

Value:

['No Rex',
 'LM63',
 'LM63 3-site',
 'CR72',
 'CR72 full',
 'IT99',
 'TSMFK01',
 'B14',
...

MODEL_LIST_CPMG_FULL

The list of the R2eff model together with all dispersion models specifically for CPMG-type experiments.

Value:

['R2eff',
 'No Rex',
 'LM63',
 'LM63 3-site',
 'CR72',
 'CR72 full',
 'IT99',
 'TSMFK01',
...

MODEL_LIST_NUMERIC_CPMG_MMQ

The list of all numeric MMQ CPMG models.

Value:

['NS MMQ 2-site', 'NS MMQ 3-site', 'NS MMQ 3-site linear']

MODEL_LIST_MMQ

The list of all dispersion models specifically for MMQ CPMG-type experiments.

Value:

['MMQ CR72', 'NS MMQ 2-site', 'NS MMQ 3-site', 'NS MMQ 3-site linear']

MODEL_LIST_MQ_CPMG

The list of all dispersion models specifically for MQ CPMG-type experiments (excluding the R2eff model).

Value:

['No Rex',
 'MMQ CR72',
 'NS MMQ 2-site',
 'NS MMQ 3-site',
 'NS MMQ 3-site linear']

MODEL_LIST_MQ_CPMG_FULL

The list of the R2eff model together with all dispersion models specifically for MQ CPMG-type experiments.

Value:

['R2eff',
 'No Rex',
 'MMQ CR72',
 'NS MMQ 2-site',
 'NS MMQ 3-site',
 'NS MMQ 3-site linear']

MODEL_LIST_NUMERIC_R1RHO

The list of all dispersion models specifically for numeric R1rho-type experiments which use R1 in their equations (excluding the R2eff model and model 'No Rex').

Value:

['NS R1rho 2-site', 'NS R1rho 3-site', 'NS R1rho 3-site linear']

MODEL_LIST_R1RHO_OFF_RES

The list of all dispersion models specifically for R1rho-type experiments which use R1 in their equations (excluding the R2eff model and model 'No Rex').

Value:

['No Rex',
 'DPL94',
 'TP02',
 'TAP03',
 'MP05',
 'NS R1rho 2-site',
 'NS R1rho 3-site',
 'NS R1rho 3-site linear']

MODEL_LIST_R1RHO

The list of all dispersion models specifically for R1rho-type experiments (excluding the R2eff model).

Value:

['No Rex',
 'M61',
 'M61 skew',
 'DPL94',
 'TP02',
 'TAP03',
 'MP05',
 'NS R1rho 2-site',
...

MODEL_LIST_R1RHO_FULL

The list of the R2eff model together with all dispersion models specifically for R1rho-type experiments.

Value:

['R2eff',
 'No Rex',
 'M61',
 'M61 skew',
 'DPL94',
 'TP02',
 'TAP03',
 'MP05',
...

MODEL_LIST_ANALYTIC

The list of all analytic models.

Value:

['LM63',
 'LM63 3-site',
 'CR72',
 'CR72 full',
 'IT99',
 'TSMFK01',
 'B14',
 'B14 full',
...

MODEL_LIST_NUMERIC

The list of all numeric models.

Value:

['NS CPMG 2-site 3D',
 'NS CPMG 2-site 3D full',
 'NS CPMG 2-site star',
 'NS CPMG 2-site star full',
 'NS CPMG 2-site expanded',
 'NS R1rho 2-site',
 'NS R1rho 3-site',
 'NS R1rho 3-site linear',
...

MODEL_LIST_DISP

The list of all dispersion models (excluding the R2eff model).

Value:

['No Rex',
 'LM63',
 'LM63 3-site',
 'CR72',
 'CR72 full',
 'IT99',
 'TSMFK01',
 'B14',
...

MODEL_LIST_FULL

The list of the R2eff model together with all dispersion models.

Value:

['R2eff',
 'No Rex',
 'LM63',
 'LM63 3-site',
 'CR72',
 'CR72 full',
 'IT99',
 'TSMFK01',
...

MODEL_LIST_INV_RELAX_TIMES

The inverted relaxation delay

Value:

['B14',
 'B14 full',
 'MMQ CR72',
 'NS CPMG 2-site 3D',
 'NS CPMG 2-site 3D full',
 'NS CPMG 2-site expanded',
 'NS CPMG 2-site star',
 'NS CPMG 2-site star full',
...

MODEL_LIST_R20B

Models using R20B.

Value:

['B14 full',
 'CR72 full',
 'NS CPMG 2-site 3D full',
 'NS CPMG 2-site star full']

MODEL_LIST_DW_MIX_DOUBLE

Models using parameters with mixed dw, and has two variables. For example with both dw and dwH or dw_AB and dw_BC or phi_ex_B and phi_ex_C.

Value:

['LM63 3-site',
 'MMQ CR72',
 'NS MMQ 2-site',
 'NS R1rho 3-site',
 'NS R1rho 3-site linear']

MODEL_LIST_DW_MIX_QUADRUPLE

Models using parameters with mixed dw, and has four variables. For example with both dw_AB, dw_BC, dwH_AB and dwH_BC.

Value:

['NS MMQ 3-site', 'NS MMQ 3-site linear']

MODEL_LIST_FIT_R1

Value:

['No Rex', 'DPL94', 'TP02', 'TAP03', 'MP05', 'NS R1rho 2-site']

MODEL_NEST_LIST_CPMG

Value:

['NS CPMG 2-site expanded',
 'NS CPMG 2-site 3D',
 'NS CPMG 2-site star',
 'B14',
 'CR72']

MODEL_NEST_LIST_CPMG_R20B

Value:

['NS CPMG 2-site 3D full',
 'NS CPMG 2-site star full',
 'B14 full',
 'CR72 full']

MODEL_NEST_LIST_R1RHO_3SITE

Value:

['NS R1rho 3-site linear', 'NS R1rho 2-site']

MODEL_NEST_LIST_MMQ_3SITE

Value:

['NS MMQ 3-site', 'NS MMQ 3-site linear']

MODEL_NEST_CR72

Value:

['NS CPMG 2-site expanded',
 'NS CPMG 2-site 3D',
 'NS CPMG 2-site star',
 'B14',
 'CR72']

MODEL_NEST_CR72_FULL

Value:

['NS CPMG 2-site 3D full',
 'NS CPMG 2-site star full',
 'B14 full',
 'CR72 full',
 'NS CPMG 2-site expanded',
 'NS CPMG 2-site 3D',
 'NS CPMG 2-site star',
 'B14',
...

MODEL_NEST_B14

Value:

['NS CPMG 2-site expanded',
 'NS CPMG 2-site 3D',
 'NS CPMG 2-site star',
 'B14',
 'CR72']

MODEL_NEST_B14_FULL

Value:

['NS CPMG 2-site 3D full',
 'NS CPMG 2-site star full',
 'B14 full',
 'CR72 full',
 'NS CPMG 2-site expanded',
 'NS CPMG 2-site 3D',
 'NS CPMG 2-site star',
 'B14',
...

MODEL_NEST_NS_CPMG_2SITE_3D

Value:

['NS CPMG 2-site expanded',
 'NS CPMG 2-site 3D',
 'NS CPMG 2-site star',
 'B14',
 'CR72']

MODEL_NEST_NS_CPMG_2SITE_3D_FULL

Value:

['NS CPMG 2-site 3D full',
 'NS CPMG 2-site star full',
 'B14 full',
 'CR72 full',
 'NS CPMG 2-site expanded',
 'NS CPMG 2-site 3D',
 'NS CPMG 2-site star',
 'B14',
...

MODEL_NEST_NS_CPMG_2SITE_STAR

Value:

['NS CPMG 2-site expanded',
 'NS CPMG 2-site 3D',
 'NS CPMG 2-site star',
 'B14',
 'CR72']

MODEL_NEST_NS_CPMG_2SITE_STAR_FULL

Value:

['NS CPMG 2-site 3D full',
 'NS CPMG 2-site star full',
 'B14 full',
 'CR72 full',
 'NS CPMG 2-site expanded',
 'NS CPMG 2-site 3D',
 'NS CPMG 2-site star',
 'B14',
...

MODEL_NEST_NS_CPMG_2SITE_EXPANDED

Value:

['NS CPMG 2-site expanded',
 'NS CPMG 2-site 3D',
 'NS CPMG 2-site star',
 'B14',
 'CR72']

MODEL_NEST_NS_R1RHO_3SITE

Value:

['NS R1rho 3-site linear', 'NS R1rho 2-site', 'MP05', 'TAP03', 'TP02']

MODEL_NEST_NS_R1RHO_3SITE_LINEAR

Value:

['NS R1rho 3-site linear', 'NS R1rho 2-site', 'MP05', 'TAP03', 'TP02']

MODEL_NEST_NS_MMQ_3SITE

Value:

['NS MMQ 3-site', 'NS MMQ 3-site linear', 'NS MMQ 2-site', 'MMQ CR72']

MODEL_NEST_NS_MMQ_3SITE_LINEAR

Value:

['NS MMQ 3-site', 'NS MMQ 3-site linear', 'NS MMQ 2-site', 'MMQ CR72']

MODEL_DESC

Value:

{'B14': 'The Baldwin (2014) 2-site CPMG exact solution model for all t
ime scales for SQ-CPMG experiments, whereby the simplification R20A = 
R20B is assumed.',
 'B14 full': 'The Baldwin (2014) 2-site CPMG exact solution model for 
all time scales for SQ-CPMG experiments.',
 'CR72': 'The reduced Carver and Richards (1972) 2-site model for all 
time scales for SQ-CPMG experiments, whereby the simplification R20A =
 R20B is assumed.',
...

MODEL_PARAMS

Value:

{'B14': ['r2', 'pA', 'dw', 'kex'],
 'B14 full': ['r2a', 'r2b', 'pA', 'dw', 'kex'],
 'CR72': ['r2', 'pA', 'dw', 'kex'],
 'CR72 full': ['r2a', 'r2b', 'pA', 'dw', 'kex'],
 'DPL94': ['r2', 'phi_ex', 'kex'],
 'IT99': ['r2', 'pA', 'dw', 'tex'],
 'LM63': ['r2', 'phi_ex', 'kex'],
 'LM63 3-site': ['r2', 'phi_ex_B', 'phi_ex_C', 'kB', 'kC'],
...

MODEL_YEAR

Value:

{'B14': 2014,
 'B14 full': 2014,
 'CR72': 1972,
 'CR72 full': 1972,
 'DPL94': 1994,
 'IT99': 1999,
 'LM63': 1963,
 'LM63 3-site': 1963,
...

MODEL_EXP_TYPE

Value:

{'B14': 'SQ CPMG',
 'B14 full': 'SQ CPMG',
 'CR72': 'SQ CPMG',
 'CR72 full': 'SQ CPMG',
 'DPL94': 'R1rho',
 'IT99': 'SQ CPMG',
 'LM63': 'SQ CPMG',
 'LM63 3-site': 'SQ CPMG',
...

MODEL_SITES

Value:

{'B14': 2,
 'B14 full': 2,
 'CR72': 2,
 'CR72 full': 2,
 'DPL94': 2,
 'IT99': 2,
 'LM63': 2,
 'LM63 3-site': 3,
...

MODEL_EQ

Value:

{'B14': 'analytic',
 'B14 full': 'analytic',
 'CR72': 'analytic',
 'CR72 full': 'analytic',
 'DPL94': 'analytic',
 'IT99': 'analytic',
 'LM63': 'analytic',
 'LM63 3-site': 'analytic',
...

MODEL_NEST

Value:

{'B14': ['NS CPMG 2-site expanded',
         'NS CPMG 2-site 3D',
         'NS CPMG 2-site star',
         'B14',
         'CR72'],
 'B14 full': ['NS CPMG 2-site 3D full',
              'NS CPMG 2-site star full',
              'B14 full',
...