URL: <http://gna.org/bugs/?22091> Summary: ERROR: test_opendx_s2_te_rex (test_suite.gui_tests.model_free.Mf) Project: relax Submitted by: jwhowarth Submitted on: Mon 26 May 2014 01:45:50 PM UTC Category: Test suite Specific analysis category: None Priority: 5 - Normal Severity: 3 - Normal Status: None Assigned to: None Originator Name: Originator Email: Open/Closed: Open Release: 3.2.1 Discussion Lock: Any Operating System: Mac OS X (Intel) _______________________________________________________ Details: On x86_64-apple-darwin, the relax 3.2.1, built as a fink package against python 2.7.6, scipy 0.14.0 and bumpy 1.18.1, produces the following failures in the GUI tests… % relax --test-suite Echoing of user function calls has been enabled. ============================= = System / functional tests = ============================= ............................................................................................................................................................................................................................................................................................................................................................................................ ---------------------------------------------------------------------- Ran 380 tests in 1992.216s OK ============== = Unit tests = ============== .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ---------------------------------------------------------------------- Ran 1310 tests in 39.506s OK ============= = GUI tests = ============= . (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type .... (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type . (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type . (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type . (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type ........... (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type . (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type . (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type .E (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type .. (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type ... (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type ............................ (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type .... (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type . (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type . (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type . (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type . (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type . (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type .... (python2.7:54684): Gtk-WARNING **: Unable to find default local directory monitor type .. ====================================================================== ERROR: test_opendx_s2_te_rex (test_suite.gui_tests.model_free.Mf) Mapping the {S2, te, Rex} chi2 space through the OpenDX user function dx.map(). ---------------------------------------------------------------------- relax> sequence.read(file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/noe.500.out', dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, spin_num_col=None, spin_name_col=None, sep=None, spin_id=None) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> spin.name(name='N', spin_id=None, force=False) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> spin.element(element='N', spin_id=None, force=False) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> spin.isotope(isotope='15N', spin_id='@N', force=False) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> relax_data.read(ri_id='R1_600', ri_type='R1', frq=600000000.0, file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r1.600.out', dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, spin_id=None) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> relax_data.read(ri_id='R2_600', ri_type='R2', frq=600000000.0, file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r2.600.out', dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, spin_id=None) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> relax_data.read(ri_id='NOE_600', ri_type='NOE', frq=600000000.0, file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/noe.600.out', dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, spin_id=None) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> relax_data.read(ri_id='R1_500', ri_type='R1', frq=500000000.0, file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r1.500.out', dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, spin_id=None) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> relax_data.read(ri_id='R2_500', ri_type='R2', frq=500000000.0, file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r2.500.out', dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, spin_id=None) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> relax_data.read(ri_id='NOE_500', ri_type='NOE', frq=500000000.0, file='/sw/lib/relax-py27/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/noe.500.out', dir=None, spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, spin_id=None) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> diffusion_tensor.init(params=1e-08, time_scale=1.0, d_scale=1.0, angle_units='deg', param_types=0, spheroid_type=None, fixed=True) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> sequence.attach_protons() RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> interatom.define(spin_id1='@N', spin_id2='@H', direct_bond=True, pipe=None) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> interatom.set_dist(spin_id1='@N', spin_id2='@H', ave_dist=1.02e-10, unit='meter') RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> value.set(val=-0.000172, param='csa', index=0, spin_id=None, error=False) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. relax> model_free.select_model(model='m4', spin_id=None) RelaxError: No data pipes currently exist. Please use the pipe.create user function first. Traceback (most recent call last): File "/sw/lib/relax-py27/test_suite/gui_tests/model_free.py", line 528, in test_opendx_s2_te_rex self.script_exec(status.install_path + sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'model_free'+sep+'opendx_s2_te_rex.py') File "/sw/lib/relax-py27/test_suite/gui_tests/base_classes.py", line 167, in script_exec exec_script(script, space) File "/sw/lib/relax-py27/prompt/interpreter.py", line 347, in exec_script runpy.run_module(module, globals) File "/sw/lib/python2.7/runpy.py", line 180, in run_module fname, loader, pkg_name) File "/sw/lib/python2.7/runpy.py", line 72, in _run_code exec code in run_globals File "/sw/lib/relax-py27/test_suite/system_tests/scripts/model_free/opendx_s2_te_rex.py", line 45, in <module> self._execute_uf(uf_name='dx.map', params=['s2', 'te', 'rex'], spin_id=':2@N', inc=2, lower=[0.0, 0, 0], upper=[1.0, 10000e-12, 3.0 / (2.0 * pi * 600000000.0)**2], point=[0.970, 2048.0e-12, 0.149 / (2.0 * pi * 600000000.0)**2], file_prefix='devnull', point_file='devnull') File "/sw/lib/relax-py27/test_suite/gui_tests/base_classes.py", line 125, in _execute_uf uf(wx_wizard_run=False, **kargs) File "/sw/lib/relax-py27/gui/uf_objects.py", line 201, in __call__ status = self.create_wizard(wx_parent) File "/sw/lib/relax-py27/gui/uf_objects.py", line 293, in create_wizard self.page = self.create_page(self.wizard, sync=self._sync) File "/sw/lib/relax-py27/gui/uf_objects.py", line 272, in create_page return Uf_page(self._name, parent=wizard, height_desc=self._height_desc, sync=self._sync, execute=execute) File "/sw/lib/relax-py27/gui/uf_objects.py", line 352, in __init__ super(Uf_page, self).__init__(parent, height_desc=height_desc) File "/sw/lib/relax-py27/gui/wizards/wiz_objects.py", line 127, in __init__ self.add_contents(main_sizer) File "/sw/lib/relax-py27/gui/uf_objects.py", line 617, in add_contents raise RelaxError("The Python object type '%s' cannot be handled." % arg['py_type']) RelaxError: RelaxError: The Python object type 'list_val_or_list_of_list_val' cannot be handled. ---------------------------------------------------------------------- Ran 71 tests in 384.680s FAILED (errors=1) =============================== = Software verification tests = =============================== .. ---------------------------------------------------------------------- Ran 2 tests in 3.701s OK =================================== = Summary of the relax test suite = =================================== Optional packages/modules ========================= No tests skipped due to missing modules. Synopsis ======== System/functional tests ..................................................................... [ OK ] Unit tests .................................................................................. [ OK ] GUI tests ............................................................................... [ Failed ] Software verification tests ................................................................. [ OK ] Synopsis ................................................................................ [ Failed ] _______________________________________________________ Reply to this item at: <http://gna.org/bugs/?22091> _______________________________________________ Message sent via/by Gna! http://gna.org/