[ Identifiers | To Do ]

Identifier Index

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C

C_HN_BOND_LENGTH_RDC (in lib.physical_constants)	calc_S2f_tf_S2s_ts_jw_comps() (in lib.spectral_densities.model_free_components)	combined_q() (in Stereochem_analysis)
C_module_exp_fn (in dep_check)	calc_S_5D() (in data_store.align_tensor)	combo_list (in gui.input_elements)
C_module_exp_fn_mesg (in dep_check)	calc_S_diag() (in data_store.align_tensor)	Combo_list (in gui.input_elements.combo_list)
C_N_BOND_LENGTH_RDC (in lib.physical_constants)	calc_sigma_noe() (in Consistency)	command (in prompt)
CA_C_BOND_LENGTH_RDC (in lib.physical_constants)	calc_sigma_noe() (in Mapping)	command() (in pipe_control.molmol)
CA_HA_BOND_LENGTH_RDC (in lib.physical_constants)	calc_sphere_ci() (in lib.diffusion.weights)	command() (in pipe_control.pymol_control)
calc() (in pipe_control.minimise)	calc_sphere_dti() (in lib.diffusion.correlation_time)	comments_strip() (in bmrblib.pystarlib.Text)
calc_A() (in data_store.align_tensor)	calc_sphere_ti() (in lib.diffusion.correlation_time)	comp_csa_const_func() (in lib.auto_relaxation.ri_comps)
calc_A0() (in data_store.align_tensor)	calc_spheroid_ci() (in lib.diffusion.weights)	comp_csa_const_grad() (in lib.auto_relaxation.ri_comps)
calc_A1() (in data_store.align_tensor)	calc_spheroid_d2ci() (in lib.diffusion.weights)	comp_csa_const_hess() (in lib.auto_relaxation.ri_comps)
calc_A2() (in data_store.align_tensor)	calc_spheroid_d2di() (in lib.diffusion.direction_cosine)	comp_dip_const_func() (in lib.auto_relaxation.ri_comps)
calc_A_5D() (in data_store.align_tensor)	calc_spheroid_d2ti() (in lib.diffusion.correlation_time)	comp_dip_const_grad() (in lib.auto_relaxation.ri_comps)
calc_A_diag() (in data_store.align_tensor)	calc_spheroid_dci() (in lib.diffusion.weights)	comp_dip_const_hess() (in lib.auto_relaxation.ri_comps)
calc_Aa() (in data_store.align_tensor)	calc_spheroid_ddi() (in lib.diffusion.direction_cosine)	comp_r1_csa_const() (in lib.auto_relaxation.ri_comps)
calc_Am1() (in data_store.align_tensor)	calc_spheroid_di() (in lib.diffusion.direction_cosine)	comp_r1_csa_jw() (in lib.auto_relaxation.ri_comps)
calc_Am2() (in data_store.align_tensor)	calc_spheroid_dti() (in lib.diffusion.correlation_time)	comp_r1_dip_jw() (in lib.auto_relaxation.ri_comps)
calc_Ar() (in data_store.align_tensor)	calc_spheroid_objects() (in Test_diff_tensor)	comp_r2_csa_const() (in lib.auto_relaxation.ri_comps)
calc_ave_dist() (in specific_analyses.n_state_model.data)	calc_spheroid_ti() (in lib.diffusion.correlation_time)	comp_r2_csa_jw() (in lib.auto_relaxation.ri_comps)
calc_Axxyy() (in data_store.align_tensor)	calc_spheroid_type() (in data_store.diff_tensor)	comp_r2_dip_const() (in lib.auto_relaxation.ri_comps)
calc_Azz() (in data_store.align_tensor)	calc_Sxx() (in data_store.align_tensor)	comp_r2_dip_jw() (in lib.auto_relaxation.ri_comps)
calc_B14_chi2() (in Dispersion)	calc_Sxxyy() (in data_store.align_tensor)	comp_rex_const_func() (in lib.auto_relaxation.ri_comps)
calc_bk() (in Fletcher_reeves)	calc_Sxy() (in data_store.align_tensor)	comp_rex_const_grad() (in lib.auto_relaxation.ri_comps)
calc_bk() (in Hestenes_stiefel)	calc_Sxz() (in data_store.align_tensor)	comp_sigma_noe_dip_jw() (in lib.auto_relaxation.ri_comps)
calc_bk() (in Polak_ribiere)	calc_Syy() (in data_store.align_tensor)	compare_objects() (in specific_analyses.model_free.data)
calc_bk() (in Polak_ribiere_plus)	calc_Syz() (in data_store.align_tensor)	compare_sequence() (in pipe_control.sequence)
calc_chi_tensor() (in lib.alignment.alignment_tensor)	calc_Szz() (in data_store.align_tensor)	compat (in lib)
calc_covariance_matrix() (in lib.structure.pca)	calc_TAP03() (in Dispersion)	compile_1st_matrix_double_rotor() (in lib.frame_order.double_rotor)
calc_CR72_chi2() (in Dispersion)	calc_tensor() (in data_store.diff_tensor)	compile_1st_matrix_free_rotor() (in lib.frame_order.free_rotor)
calc_d2noe() (in lib.auto_relaxation.ri)	calc_tensor_diag() (in data_store.diff_tensor)	compile_1st_matrix_iso_cone() (in lib.frame_order.iso_cone)
calc_d2r1() (in lib.auto_relaxation.ri)	calc_TP02() (in Dispersion)	compile_1st_matrix_iso_cone_free_rotor() (in lib.frame_order.iso_cone_free_rotor)
calc_diff_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	calc_two_point_r2eff() (in lib.dispersion.two_point)	compile_1st_matrix_iso_cone_torsionless() (in lib.frame_order.iso_cone_torsionless)
calc_diff_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	calc_two_point_r2eff_err() (in lib.dispersion.two_point)	compile_1st_matrix_pseudo_ellipse() (in lib.frame_order.pseudo_ellipse)
calc_diff_d2jw_dOjdOk() (in lib.spectral_densities.model_free)	calc_unit_x() (in data_store.align_tensor)	compile_1st_matrix_pseudo_ellipse_free_rotor() (in lib.frame_order.pseudo_ellipse_free_rotor)
calc_diff_djw_comps() (in lib.spectral_densities.model_free_components)	calc_unit_y() (in data_store.align_tensor)	compile_1st_matrix_pseudo_ellipse_torsionless() (in lib.frame_order.pseudo_ellipse_torsionless)
calc_diff_djw_dGj() (in lib.spectral_densities.model_free)	calc_unit_z() (in data_store.align_tensor)	compile_1st_matrix_rotor() (in lib.frame_order.rotor)
calc_diff_djw_dOj() (in lib.spectral_densities.model_free)	calc_vectors() (in Frame_order)	compile_2nd_matrix_double_rotor() (in lib.frame_order.double_rotor)
calc_diff_S2_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	calculate() (in API_base)	compile_2nd_matrix_free_rotor() (in lib.frame_order.free_rotor)
calc_diff_S2_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	calculate() (in Consistency_tests)	compile_2nd_matrix_iso_cone() (in lib.frame_order.iso_cone)
calc_diff_S2_d2jw_dGjdS2() (in lib.spectral_densities.model_free)	calculate() (in Frame_order)	compile_2nd_matrix_iso_cone_free_rotor() (in lib.frame_order.iso_cone_free_rotor)
calc_diff_S2_d2jw_dOjdOk() (in lib.spectral_densities.model_free)	calculate() (in Jw_mapping)	compile_2nd_matrix_iso_cone_torsionless() (in lib.frame_order.iso_cone_torsionless)
calc_diff_S2_d2jw_dOjdS2() (in lib.spectral_densities.model_free)	calculate() (in Model_free)	compile_2nd_matrix_pseudo_ellipse() (in lib.frame_order.pseudo_ellipse)
calc_diff_S2_djw_dGj() (in lib.spectral_densities.model_free)	calculate() (in N_state_model)	compile_2nd_matrix_pseudo_ellipse_free_rotor() (in lib.frame_order.pseudo_ellipse_free_rotor)
calc_diff_S2_djw_dOj() (in lib.spectral_densities.model_free)	calculate() (in Noe)	compile_2nd_matrix_pseudo_ellipse_torsionless() (in lib.frame_order.pseudo_ellipse_torsionless)
calc_diff_S2_te_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	calculate() (in Relax_disp)	compile_2nd_matrix_rotor() (in lib.frame_order.rotor)
calc_diff_S2_te_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	calculate_r2eff() (in specific_analyses.relax_disp.optimisation)	compile_api_manual_html() (in scons.manuals)
calc_diff_S2_te_d2jw_dGjdS2() (in lib.spectral_densities.model_free)	cancel() (in Free_file_format_window)	compile_user_manual_html() (in scons.manuals)
calc_diff_S2_te_d2jw_dGjdte() (in lib.spectral_densities.model_free)	capture_keys() (in LogCtrl)	compile_user_manual_pdf() (in scons.manuals)
calc_diff_S2_te_d2jw_dOjdOk() (in lib.spectral_densities.model_free)	capture_mouse() (in LogCtrl)	complex_inner_product() (in lib.geometry.vectors)
calc_diff_S2_te_d2jw_dOjdS2() (in lib.spectral_densities.model_free)	capture_mouse_wheel() (in LogCtrl)	components (in gui)
calc_diff_S2_te_d2jw_dOjdte() (in lib.spectral_densities.model_free)	capture_scroll() (in LogCtrl)	cone (in lib.structure.represent)
calc_diff_S2_te_djw_comps() (in lib.spectral_densities.model_free_components)	Capturing_exception (in multi.misc)	cone() (in lib.structure.represent.cone)
calc_diff_S2_te_djw_dGj() (in lib.spectral_densities.model_free)	cartesian_to_spherical() (in lib.geometry.coord_transform)	cone_angle_lower() (in specific_analyses.frame_order.parameter_object)
calc_diff_S2_te_djw_dOj() (in lib.spectral_densities.model_free)	cartoon() (in pipe_control.pymol_control)	cone_angle_upper() (in specific_analyses.frame_order.parameter_object)
calc_diff_S2f_S2_ts_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	category (in RelaxTestRunner)	cone_edge() (in lib.structure.represent.cone)
calc_diff_S2f_S2_ts_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	CategoryList (in bmrblib.base_classes)	cone_pdb() (in pipe_control.pymol_control)
calc_diff_S2f_S2_ts_d2jw_dGjdS2() (in lib.spectral_densities.model_free)	catia (in specific_analyses.relax_disp)	cone_pdb() (in specific_analyses.n_state_model.uf)
calc_diff_S2f_S2_ts_d2jw_dGjdS2f() (in lib.spectral_densities.model_free)	catia_execute() (in specific_analyses.relax_disp.catia)	conect() (in lib.structure.pdb_read)
calc_diff_S2f_S2_ts_d2jw_dGjdts() (in lib.spectral_densities.model_free)	catia_input() (in specific_analyses.relax_disp.catia)	conect() (in lib.structure.pdb_write)
calc_diff_S2f_S2_ts_d2jw_dOjdOk() (in lib.spectral_densities.model_free)	cauchy_point (in minfx)	cones (in lib.structure)
calc_diff_S2f_S2_ts_d2jw_dOjdS2() (in lib.spectral_densities.model_free)	Cauchy_point (in minfx.cauchy_point)	Conjugate_gradient (in minfx.base_classes)
calc_diff_S2f_S2_ts_d2jw_dOjdS2f() (in lib.spectral_densities.model_free)	cauchy_point() (in minfx.cauchy_point)	connect_atom() (in Internal)
calc_diff_S2f_S2_ts_d2jw_dOjdts() (in lib.spectral_densities.model_free)	cd() (in pipe_control.system)	connect_atom() (in pipe_control.structure.main)
calc_diff_S2f_S2_ts_djw_comps() (in lib.spectral_densities.model_free_components)	cdp_name() (in pipe_control.pipes)	Consistency (in target_functions.consistency_tests)
calc_diff_S2f_S2_ts_djw_dGj() (in lib.spectral_densities.model_free)	central_star() (in lib.sequence_alignment.msa)	consistency_test_params (in user_functions.grace)
calc_diff_S2f_S2_ts_djw_dOj() (in lib.spectral_densities.model_free)	centre() (in Info_box)	consistency_test_params (in user_functions.value)
calc_diff_S2f_S2s_ts_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	centre() (in pipe_control.paramag)	consistency_tests (in specific_analyses)
calc_diff_S2f_S2s_ts_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	centre() (in pipe_control.pcs)	Consistency_tests (in specific_analyses.consistency_tests.api)
calc_diff_S2f_S2s_ts_d2jw_dGjdS2f() (in lib.spectral_densities.model_free)	centre_of_mass() (in lib.structure.mass)	consistency_tests (in target_functions)
calc_diff_S2f_S2s_ts_d2jw_dGjdS2s() (in lib.spectral_densities.model_free)	CHAIN_ID_LIST (in lib.structure.internal.object)	consistency_tests (in test_suite.gui_tests)
calc_diff_S2f_S2s_ts_d2jw_dGjdts() (in lib.spectral_densities.model_free)	change_delay_down() (in Grid_base)	consistency_tests (in test_suite.system_tests)
calc_diff_S2f_S2s_ts_d2jw_dOjdOk() (in lib.spectral_densities.model_free)	change_delay_up() (in Grid_base)	consistency_tests (in user_functions)
calc_diff_S2f_S2s_ts_d2jw_dOjdS2f() (in lib.spectral_densities.model_free)	change_type() (in pipe_control.pipes)	Consistency_tests_params (in specific_analyses.consistency_tests.parameter_object)
calc_diff_S2f_S2s_ts_d2jw_dOjdts() (in lib.spectral_densities.model_free)	Check (in lib.checks)	consistent_interatomic_data() (in pipe_control.interatomic)
calc_diff_S2f_S2s_ts_djw_comps() (in lib.spectral_densities.model_free_components)	check_c_modules() (in specific_analyses.relax_disp.checks)	constraint_algorithm() (in API_base)
calc_diff_S2f_S2s_ts_djw_dGj() (in lib.spectral_densities.model_free)	check_chi2() (in Frame_order)	constraint_algorithm() (in Frame_order)
calc_diff_S2f_S2s_ts_djw_dOj() (in lib.spectral_densities.model_free)	check_curve_fitting() (in Rx)	constraint_algorithm() (in Relax_disp)
calc_diff_S2f_tf_S2_ts_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	check_curve_fitting() (in Relax_fit)	constraint_linear (in minfx)
calc_diff_S2f_tf_S2_ts_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	check_curve_fitting_manual() (in Relax_fit)	Constraint_linear (in minfx.constraint_linear)
calc_diff_S2f_tf_S2_ts_d2jw_dGjdS2f() (in lib.spectral_densities.model_free)	check_disp_points() (in specific_analyses.relax_disp.checks)	contact_relax() (in Main)
calc_diff_S2f_tf_S2_ts_d2jw_dGjdtf() (in lib.spectral_densities.model_free)	check_domain (in specific_analyses.frame_order.checks)	Container (in auto_analyses.dauvergne_protocol)
calc_diff_S2f_tf_S2_ts_d2jw_dOjdOk() (in lib.spectral_densities.model_free)	check_domain_func() (in specific_analyses.frame_order.checks)	Container (in gui.base_classes)
calc_diff_S2f_tf_S2_ts_d2jw_dOjdS2f() (in lib.spectral_densities.model_free)	check_ellipsoid() (in Diffusion_tensor)	Container (in gui.spin_viewer.containers)
calc_diff_S2f_tf_S2_ts_d2jw_dOjdtf() (in lib.spectral_densities.model_free)	check_exceptions() (in GuiTestCase)	Container (in test_suite.unit_tests._pipe_control.test_relax_data)
calc_diff_S2f_tf_S2_ts_djw_comps() (in lib.spectral_densities.model_free_components)	check_exp_type() (in specific_analyses.relax_disp.checks)	container (in test_suite.unit_tests._prompt)
calc_diff_S2f_tf_S2_ts_djw_dGj() (in lib.spectral_densities.model_free)	check_exp_type_fixed_time() (in specific_analyses.relax_disp.checks)	Container (in test_suite.unit_tests._prompt.container)
calc_diff_S2f_tf_S2_ts_djw_dOj() (in lib.spectral_densities.model_free)	check_frequency (in pipe_control.spectrometer)	Container (in test_suite.unit_tests._prompt.data_types)
calc_diff_S2f_tf_S2s_ts_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	check_frequency_func() (in pipe_control.spectrometer)	Container (in user_functions.objects)
calc_diff_S2f_tf_S2s_ts_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	check_function() (in Test_arg_check)	Container_base (in gui.spin_viewer.containers)
calc_diff_S2f_tf_S2s_ts_d2jw_dGjdS2f() (in lib.spectral_densities.model_free)	check_integrity() (in File)	containers (in gui.spin_viewer)
calc_diff_S2f_tf_S2s_ts_d2jw_dGjdtf() (in lib.spectral_densities.model_free)	check_integrity() (in SaveFrame)	contains() (in Param_list)
calc_diff_S2f_tf_S2s_ts_d2jw_dOjdOk() (in lib.spectral_densities.model_free)	check_integrity() (in TagTable)	contains_mol() (in Selection)
calc_diff_S2f_tf_S2s_ts_d2jw_dOjdS2f() (in lib.spectral_densities.model_free)	check_intensity_errors() (in specific_analyses.relax_disp.data)	contains_res() (in Selection)
calc_diff_S2f_tf_S2s_ts_d2jw_dOjdS2s() (in lib.spectral_densities.model_free)	check_interpolate_offset_cpmg_model() (in specific_analyses.relax_disp.checks)	contains_spin() (in Selection)
calc_diff_S2f_tf_S2s_ts_d2jw_dOjdtf() (in lib.spectral_densities.model_free)	check_missing_r1() (in specific_analyses.relax_disp.checks)	contains_spin_id() (in Selection)
calc_diff_S2f_tf_S2s_ts_djw_comps() (in lib.spectral_densities.model_free_components)	check_mixed_curve_types() (in specific_analyses.relax_disp.checks)	contract() (in Simplex)
calc_diff_S2f_tf_S2s_ts_djw_dGj() (in lib.spectral_densities.model_free)	check_model (in specific_analyses.frame_order.checks)	contract_orig() (in Simplex)
calc_diff_S2f_tf_S2s_ts_djw_dOj() (in lib.spectral_densities.model_free)	check_model_func() (in specific_analyses.frame_order.checks)	controller (in gui)
calc_Diso() (in data_store.diff_tensor)	check_model_setup (in specific_analyses.relax_fit.checks)	Controller (in gui.controller)
calc_dnoe() (in lib.auto_relaxation.ri)	check_model_setup_func() (in specific_analyses.relax_fit.checks)	conv_factor_rex() (in specific_analyses.model_free.parameters)
calc_Dpar() (in data_store.diff_tensor)	check_model_type() (in specific_analyses.relax_disp.checks)	conv_test() (in Simplex)
calc_Dpar_unit() (in data_store.diff_tensor)	check_mol_res_spin_data() (in pipe_control.mol_res_spin)	convergence() (in dAuvergne_protocol)
calc_Dper() (in data_store.diff_tensor)	check_numpy_less_1_8_and_numerical_model() (in Relax_disp)	conversion (in lib.structure)
calc_DPL94() (in Dispersion)	check_param() (in Param_list)	conversion_factor() (in Param_list)
calc_dr1() (in lib.auto_relaxation.ri)	check_parameters (in specific_analyses.frame_order.checks)	conversions (in lib.frame_order)
calc_Dratio() (in data_store.diff_tensor)	check_parameters_func() (in specific_analyses.frame_order.checks)	convert() (in pipe_control.rdc)
calc_Dx() (in data_store.diff_tensor)	check_pdb_model_representation() (in Frame_order)	convert_axis_alpha_to_spherical() (in lib.frame_order.conversions)
calc_Dx_unit() (in data_store.diff_tensor)	check_pipe (in pipe_control.pipes)	convert_from_global_index() (in pipe_control.mol_res_spin)
calc_Dy() (in data_store.diff_tensor)	check_pipe_func() (in pipe_control.pipes)	convert_relax_data() (in lib.software.bruker_dc)
calc_Dy_unit() (in data_store.diff_tensor)	check_pipe_setup() (in pipe_control.j_coupling)	convert_to_float() (in gui.string_conv)
calc_Dz() (in data_store.diff_tensor)	check_pipe_setup() (in pipe_control.pcs)	coord_transform (in lib.geometry)
calc_Dz_unit() (in data_store.diff_tensor)	check_pipe_setup() (in pipe_control.rdc)	coordinate_descent (in minfx)
calc_eigvals() (in data_store.align_tensor)	check_pipe_type() (in specific_analyses.relax_disp.checks)	Coordinate_descent (in minfx.coordinate_descent)
calc_ellipsoid_ci() (in lib.diffusion.weights)	check_pivot (in specific_analyses.frame_order.checks)	coordinate_descent() (in minfx.coordinate_descent)
calc_ellipsoid_d2ci() (in lib.diffusion.weights)	check_pivot_func() (in specific_analyses.frame_order.checks)	coordinates (in lib.structure.internal)
calc_ellipsoid_d2di() (in lib.diffusion.direction_cosine)	check_previous_result() (in Relax_disp_rep)	copy() (in pipe_control.align_tensor)
calc_ellipsoid_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	check_rdcs() (in pipe_control.rdc)	copy() (in pipe_control.diffusion_tensor)
calc_ellipsoid_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	check_read_results_1_3() (in Mf)	copy() (in pipe_control.interatomic)
calc_ellipsoid_d2ti() (in lib.diffusion.correlation_time)	check_relax_times() (in specific_analyses.relax_disp.checks)	copy() (in pipe_control.j_coupling)
calc_ellipsoid_dci() (in lib.diffusion.weights)	check_return_conversion() (in Test_rotations)	copy() (in pipe_control.pcs)
calc_ellipsoid_ddi() (in lib.diffusion.direction_cosine)	check_rotation() (in Test_rotations)	copy() (in pipe_control.pipes)
calc_ellipsoid_di() (in lib.diffusion.direction_cosine)	check_sequence (in lib.sequence)	copy() (in pipe_control.rdc)
calc_ellipsoid_djw_dGj() (in lib.spectral_densities.model_free)	check_sequence_func() (in lib.sequence)	copy() (in pipe_control.relax_data)
calc_ellipsoid_dti() (in lib.diffusion.correlation_time)	check_spectra_id_setup() (in specific_analyses.relax_disp.checks)	copy() (in pipe_control.sequence)
calc_ellipsoid_S2_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	check_spectrometer_frq() (in specific_analyses.relax_disp.checks)	copy() (in pipe_control.value)
calc_ellipsoid_S2_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	check_spectrometer_setup (in pipe_control.spectrometer)	copy() (in specific_analyses.relax_disp.parameters)
calc_ellipsoid_S2_d2jw_dGjdS2() (in lib.spectral_densities.model_free)	check_spectrometer_setup_func() (in pipe_control.spectrometer)	copy_frequencies() (in pipe_control.spectrometer)
calc_ellipsoid_S2_djw_dGj() (in lib.spectral_densities.model_free)	check_spectrum_id() (in pipe_control.spectrum)	copy_molecule() (in pipe_control.mol_res_spin)
calc_ellipsoid_S2_te_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	check_spectrum_ids() (in specific_analyses.relax_disp.checks)	copy_residue() (in pipe_control.mol_res_spin)
calc_ellipsoid_S2_te_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	check_spheroid() (in Diffusion_tensor)	copy_spin() (in pipe_control.mol_res_spin)
calc_ellipsoid_S2_te_d2jw_dGjdS2() (in lib.spectral_densities.model_free)	check_spheroid_as_ellipsoid() (in Diffusion_tensor)	copyright_file() (in scons.manuals)
calc_ellipsoid_S2_te_d2jw_dGjdte() (in lib.spectral_densities.model_free)	check_spin_selection() (in Selection)	copySign() (in lib.float)
calc_ellipsoid_S2_te_djw_dGj() (in lib.spectral_densities.model_free)	check_structure (in pipe_control.structure.checks)	copysign() (in lib.geometry.rotations)
calc_ellipsoid_S2f_S2_ts_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	check_structure_func() (in pipe_control.structure.checks)	corr_plot() (in pipe_control.pcs)
calc_ellipsoid_S2f_S2_ts_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	check_type() (in pipe_control.pipes)	corr_plot() (in pipe_control.rdc)
calc_ellipsoid_S2f_S2_ts_d2jw_dGjdS2() (in lib.spectral_densities.model_free)	check_types (in lib)	correlation_matrix() (in lib.plotting.api)
calc_ellipsoid_S2f_S2_ts_d2jw_dGjdS2f() (in lib.spectral_densities.model_free)	check_validate_arg() (in Test_arg_check)	correlation_matrix() (in lib.plotting.gnuplot)
calc_ellipsoid_S2f_S2_ts_d2jw_dGjdts() (in lib.spectral_densities.model_free)	check_vars() (in dAuvergne_protocol)	correlation_matrix() (in lib.plotting.text)
calc_ellipsoid_S2f_S2_ts_djw_dGj() (in lib.spectral_densities.model_free)	check_vars() (in Frame_order_analysis)	correlation_time (in lib.diffusion)
calc_ellipsoid_S2f_S2s_ts_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	check_vars() (in NOE_calc)	Cosine (in lib.structure.cones)
calc_ellipsoid_S2f_S2s_ts_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	check_vars() (in Relax_disp)	count_atoms() (in Internal_selection)
calc_ellipsoid_S2f_S2s_ts_d2jw_dGjdS2f() (in lib.spectral_densities.model_free)	check_vars() (in Relax_fit)	count_exp() (in specific_analyses.relax_disp.data)
calc_ellipsoid_S2f_S2s_ts_d2jw_dGjdS2s() (in lib.spectral_densities.model_free)	check_vectors() (in N_state_model)	count_frq() (in specific_analyses.relax_disp.data)
calc_ellipsoid_S2f_S2s_ts_d2jw_dGjdts() (in lib.spectral_densities.model_free)	checks (in lib)	count_max_spins_per_residue() (in pipe_control.mol_res_spin)
calc_ellipsoid_S2f_S2s_ts_djw_dGj() (in lib.spectral_densities.model_free)	checks (in pipe_control.structure)	count_molecules() (in pipe_control.mol_res_spin)
calc_ellipsoid_S2f_tf_S2_ts_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	checks (in specific_analyses.frame_order)	count_relax_times() (in specific_analyses.relax_disp.data)
calc_ellipsoid_S2f_tf_S2_ts_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	checks (in specific_analyses.relax_disp)	count_residues() (in pipe_control.mol_res_spin)
calc_ellipsoid_S2f_tf_S2_ts_d2jw_dGjdS2f() (in lib.spectral_densities.model_free)	checks (in specific_analyses.relax_fit)	count_sobol_points() (in auto_analyses.frame_order)
calc_ellipsoid_S2f_tf_S2_ts_d2jw_dGjdtf() (in lib.spectral_densities.model_free)	chem_shift_anisotropy (in bmrblib.NMR_parameters)	count_sobol_points() (in specific_analyses.frame_order.optimisation)
calc_ellipsoid_S2f_tf_S2_ts_djw_dGj() (in lib.spectral_densities.model_free)	chem_shift_anisotropy_v3_1 (in bmrblib.NMR_parameters)	count_spins() (in pipe_control.mol_res_spin)
calc_ellipsoid_S2f_tf_S2s_ts_d2jw_dGjdGk() (in lib.spectral_densities.model_free)	chemical_shift (in lib)	count_spins() (in specific_analyses.relax_disp.data)
calc_ellipsoid_S2f_tf_S2s_ts_d2jw_dGjdOj() (in lib.spectral_densities.model_free)	chemical_shift (in pipe_control)	count_unique_elements() (in lib.list)
calc_ellipsoid_S2f_tf_S2s_ts_d2jw_dGjdS2f() (in lib.spectral_densities.model_free)	chemical_shift (in test_suite.system_tests)	covariance_matrix() (in pipe_control.error_analysis)
calc_ellipsoid_S2f_tf_S2s_ts_d2jw_dGjdtf() (in lib.spectral_densities.model_free)	Chemical_shift (in test_suite.system_tests.chemical_shift)	covariance_matrix() (in API_base)
calc_ellipsoid_S2f_tf_S2s_ts_djw_dGj() (in lib.spectral_densities.model_free)	chemical_shift (in user_functions)	covariance_matrix() (in Relax_fit)
calc_ellipsoid_ti() (in lib.diffusion.correlation_time)	ChemShiftAnisotropy (in bmrblib.NMR_parameters.chem_shift_anisotropy)	cpmg_setup() (in specific_analyses.relax_disp.data)
calc_eta() (in data_store.align_tensor)	ChemShiftAnisotropy_v3_1 (in bmrblib.NMR_parameters.chem_shift_anisotropy_v3_1)	cpmgfit (in specific_analyses.relax_disp)
calc_euler() (in data_store.align_tensor)	ChemShiftAnisotropySaveframe (in bmrblib.NMR_parameters.chem_shift_anisotropy)	cpmgfit_execute() (in specific_analyses.relax_disp.cpmgfit)
calc_fixed_csa() (in lib.auto_relaxation.ri_comps)	ChemShiftAnisotropySaveframe_v3_1 (in bmrblib.NMR_parameters.chem_shift_anisotropy_v3_1)	cpmgfit_input() (in specific_analyses.relax_disp.cpmgfit)
calc_fixed_dip() (in lib.auto_relaxation.ri_comps)	chi2 (in target_functions)	cprofile_module (in dep_check)
calc_jw() (in lib.spectral_densities.model_free)	chi2() (in target_functions.chi2)	cr72 (in lib.dispersion)
calc_mean_structure() (in lib.structure.statistics)	chi2_rankN() (in target_functions.chi2)	create() (in TagCategory)
calc_MP05() (in Dispersion)	cholesky (in minfx.hessian_mods)	create() (in HeteronuclNOEList_v3_2)
calc_noe() (in lib.auto_relaxation.ri)	cholesky() (in minfx.hessian_mods.cholesky)	create() (in Rx)
calc_NOREX_R1RHO() (in Dispersion)	cholesky_mod (in minfx.hessian_mods)	create() (in ModelFree_v3_2)
calc_ns_cpmg_2site_3D_chi2() (in Dispersion)	cholesky_mod() (in Hessian_mods)	Create() (in Delay_num_cell_editor)
calc_ns_cpmg_2site_star_chi2() (in Dispersion)	cholesky_mod() (in minfx.hessian_mods.cholesky_mod)	create() (in pipe_control.dasha)
calc_ns_mmq_3site_chi2() (in Dispersion)	chunk_queue() (in Multi_processor)	create() (in pipe_control.palmer)
calc_ns_r1rho_2site() (in Dispersion)	citation() (in pipe_control.exp_info)	create() (in pipe_control.pipes)
calc_ns_r1rho_3site_chi2() (in Dispersion)	citations (in bmrblib)	create_ave_pos() (in specific_analyses.frame_order.geometric)
calc_objects() (in Test_align_tensor)	citations (in bmrblib.citations)	create_buffered_dc() (in About_base)
calc_P() (in data_store.align_tensor)	Citations (in bmrblib.citations.citations)	create_button() (in New_analysis_page)
calc_P_5D() (in data_store.align_tensor)	citations (in gui.components)	create_diff_tensor_pdb() (in pipe_control.structure.main)
calc_P_diag() (in data_store.align_tensor)	Citations (in gui.components.citations)	create_frq_label() (in pipe_control.relax_data)
calc_point_par_chi2() (in Map)	citations_v3_1 (in bmrblib.citations)	create_geometric_rep() (in specific_analyses.frame_order.geometric)
calc_projections() (in lib.structure.pca)	Citations_v3_1 (in bmrblib.citations.citations_v3_1)	create_grace2images() (in lib.plotting.grace)
calc_Pxx() (in data_store.align_tensor)	CitationsAuthor (in bmrblib.citations.citations)	create_head_text() (in Container_base)
calc_Pxxyy() (in data_store.align_tensor)	CitationsAuthor_v3_1 (in bmrblib.citations.citations_v3_1)	create_index() (in lib.dispersion.matrix_exponential)
calc_Pxy() (in data_store.align_tensor)	CitationsSaveframe (in bmrblib.citations.citations)	create_index() (in lib.dispersion.matrix_power)
calc_Pxz() (in data_store.align_tensor)	CitationsSaveframe_v3_1 (in bmrblib.citations.citations_v3_1)	create_interatom() (in pipe_control.interatomic)
calc_Pyy() (in data_store.align_tensor)	cite_html() (in Ref)	create_list() (in Tab_completion)
calc_Pyz() (in data_store.align_tensor)	cite_short() (in Ref)	create_lm_matrix() (in Levenberg_marquardt)
calc_Pzz() (in data_store.align_tensor)	Class_container (in prompt.uf_objects)	create_macro() (in pipe_control.molmol)
calc_R() (in data_store.align_tensor)	Class_container (in user_functions.objects)	create_macro() (in pipe_control.pymol_control)
calc_r1() (in lib.auto_relaxation.ri)	class_loop() (in Uf_info)	create_macro() (in Macro)
calc_r1rho() (in Test_dpl94)	CLASS_NEG_DENORMAL (in lib.float)	create_map() (in Map)
calc_r1rho() (in Test_m61)	CLASS_NEG_INF (in lib.float)	create_mc_data() (in Relax_disp_rep)
calc_r1rho() (in Test_m61b)	CLASS_NEG_NORMAL (in lib.float)	create_mc_data() (in API_base)
calc_r1rho() (in Test_mp05)	CLASS_NEG_ZERO (in lib.float)	create_mc_data() (in Frame_order)
calc_r1rho() (in Test_tap03)	CLASS_POS_DENORMAL (in lib.float)	create_mc_data() (in Model_free)
calc_r1rho() (in Test_tp02)	CLASS_POS_INF (in lib.float)	create_mc_data() (in N_state_model)
calc_r2eff() (in Relax_disp_rep)	CLASS_POS_NORMAL (in lib.float)	create_mc_data() (in Relax_disp)
calc_r2eff() (in Test_b14)	CLASS_POS_ZERO (in lib.float)	create_mc_data() (in Relax_fit)
calc_r2eff() (in Test_cr72)	CLASS_QUIET_NAN (in lib.float)	create_mf() (in Controller)
calc_r2eff() (in Test_cr72_full_cluster_one_field)	CLASS_SIGNAL_NAN (in lib.float)	create_mfdata() (in pipe_control.palmer)
calc_r2eff() (in Test_cr72_full_cluster_three_fields)	classic_colour() (in Molmol)	create_mfin() (in pipe_control.palmer)
calc_r2eff() (in Test_it99)	classic_colour() (in Pymol)	create_mfmodel() (in pipe_control.palmer)
calc_r2eff() (in Test_lm63)	classic_correlation_time() (in Macro)	create_mfpar() (in pipe_control.palmer)
calc_r2eff() (in Test_mmq_cr72)	classic_header() (in Molmol)	create_model() (in specific_analyses.model_free.uf)
calc_r2eff() (in Test_ns_cpmg_2site_3d)	classic_header() (in Pymol)	create_molecule() (in pipe_control.mol_res_spin)
calc_r2eff() (in Test_ns_cpmg_2site_expanded)	classic_order_param() (in Macro)	create_nmr_star() (in bmrblib)
calc_r2eff() (in Test_tsmfk01)	classic_rex() (in Macro)	create_object() (in lib.software.bruker_dc)
calc_ri() (in Mf)	classic_style() (in Macro)	create_page() (in Uf_object)
calc_rotating_frame_params() (in specific_analyses.relax_disp.data)	classic_style_doc (in specific_analyses.model_free.uf)	create_par_chi2() (in Map)
calc_rotation() (in data_store.align_tensor)	classify_graph_2D() (in pipe_control.plotting)	create_pseudo_spin() (in pipe_control.mol_res_spin)
calc_rotation() (in data_store.diff_tensor)	clean_manual_files() (in scons.manuals)	create_residue() (in pipe_control.mol_res_spin)
calc_Rx2_eigen_axis() (in Test_matrix_ops)	clean_up (in test_suite)	create_rotor_axis_alpha() (in lib.frame_order.conversions)
calc_Rx2_eigen_full() (in Test_matrix_ops)	clean_up_windows() (in GuiTestCase)	create_rotor_axis_euler() (in lib.frame_order.conversions)
calc_S() (in data_store.align_tensor)	clear() (in LogCtrl)	create_rotor_axis_spherical() (in lib.frame_order.conversions)
calc_S2_djw_dS2() (in lib.spectral_densities.model_free)	Clear() (in Selector_bool)	create_rotor_pdb() (in pipe_control.structure.geometric)
calc_S2_jw() (in lib.spectral_densities.model_free)	Clear() (in Selector_dir)	create_run() (in pipe_control.palmer)
calc_S2_te_d2jw_dS2dte() (in lib.spectral_densities.model_free)	Clear() (in Selector_file)	create_rx() (in Controller)
calc_S2_te_d2jw_dte2() (in lib.spectral_densities.model_free)	Clear() (in Selector_file_multiple)	create_saveframes() (in NMR_STAR_v2_1)
calc_S2_te_djw_comps() (in lib.spectral_densities.model_free_components)	Clear() (in Sequence)	create_saveframes() (in NMR_STAR_v3_1)
calc_S2_te_djw_dS2() (in lib.spectral_densities.model_free)	Clear() (in Spin_id)	create_saveframes() (in NMR_STAR_v3_2)
calc_S2_te_djw_dte() (in lib.spectral_densities.model_free)	Clear() (in Value)	create_script() (in pipe_control.dasha)
calc_S2_te_jw() (in lib.spectral_densities.model_free)	Clear() (in Uf_page)	create_sobol_data() (in Frame_order)
calc_S2_te_jw_comps() (in lib.spectral_densities.model_free_components)	clear() (in Slave_storage_command)	create_spin() (in pipe_control.mol_res_spin)
calc_S2f_S2_ts_d2jw_dS2dts() (in lib.spectral_densities.model_free)	clear_history() (in Molmol)	create_spin_input() (in specific_analyses.relax_disp.cpmgfit)
calc_S2f_S2_ts_d2jw_dS2fdts() (in lib.spectral_densities.model_free)	clear_history() (in Pymol)	create_sublist() (in Tab_completion)
calc_S2f_S2_ts_d2jw_dts2() (in lib.spectral_densities.model_free)	Clone() (in Delay_num_cell_editor)	create_subtitle() (in Container_base)
calc_S2f_S2_ts_djw_comps() (in lib.spectral_densities.model_free_components)	Clore90 (in info)	create_table() (in prompt.uf_docstring)
calc_S2f_S2_ts_djw_dS2() (in lib.spectral_densities.model_free)	close() (in Selector_file_window)	create_title() (in BaseSaveframe)
calc_S2f_S2_ts_djw_dS2f() (in lib.spectral_densities.model_free)	close() (in Sequence_window)	create_title() (in SoftwareSaveframe)
calc_S2f_S2_ts_djw_dts() (in lib.spectral_densities.model_free)	close() (in DummyFileObject)	create_title() (in Container_base)
calc_S2f_S2_ts_jw() (in lib.spectral_densities.model_free)	close_windows() (in Main)	create_vector_dist() (in pipe_control.structure.geometric)
calc_S2f_S2_ts_jw_comps() (in lib.spectral_densities.model_free_components)	closed (in GzipFixed)	create_wizard() (in Uf_object)
calc_S2f_S2s_ts_d2jw_dS2fdS2s() (in lib.spectral_densities.model_free)	closest_point() (in lib.geometry.lines)	csa (in lib.text.gui)
calc_S2f_S2s_ts_d2jw_dS2fdts() (in lib.spectral_densities.model_free)	closest_point_ax() (in lib.geometry.lines)	CSAnisotropy (in bmrblib.NMR_parameters.chem_shift_anisotropy)
calc_S2f_S2s_ts_d2jw_dS2sdts() (in lib.spectral_densities.model_free)	cluster() (in specific_analyses.relax_disp.uf)	CSAnisotropy_v3_1 (in bmrblib.NMR_parameters.chem_shift_anisotropy_v3_1)
calc_S2f_S2s_ts_d2jw_dts2() (in lib.spectral_densities.model_free)	cluster_ids() (in specific_analyses.relax_disp.uf)	CSAnisotropyExperiment (in bmrblib.NMR_parameters.chem_shift_anisotropy)
calc_S2f_S2s_ts_djw_comps() (in lib.spectral_densities.model_free_components)	cluster_spins() (in Relax_disp_rep)	CSAnisotropyExperiment_v3_1 (in bmrblib.NMR_parameters.chem_shift_anisotropy_v3_1)
calc_S2f_S2s_ts_djw_dS2f() (in lib.spectral_densities.model_free)	col1_width (in Grid_base)	CSAnisotropySoftware (in bmrblib.NMR_parameters.chem_shift_anisotropy)
calc_S2f_S2s_ts_djw_dts() (in lib.spectral_densities.model_free)	col2_width (in Grid_base)	CSAnisotropySoftware_v3_1 (in bmrblib.NMR_parameters.chem_shift_anisotropy_v3_1)
calc_S2f_S2s_ts_jw() (in lib.spectral_densities.model_free)	col_int() (in Relax_disp_rep)	Ct (in test_suite.gui_tests.consistency_tests)
calc_S2f_S2s_ts_jw_comps() (in lib.spectral_densities.model_free_components)	col_label_width (in Grid_base)	Ct (in test_suite.system_tests.consistency_tests)
calc_S2f_tf_S2_ts_d2jw_dS2fdtf() (in lib.spectral_densities.model_free)	col_min() (in Relax_disp_rep)	ctypes_module (in dep_check)
calc_S2f_tf_S2_ts_d2jw_dtf2() (in lib.spectral_densities.model_free)	col_r2eff() (in Relax_disp_rep)	ctypes_module_message (in dep_check)
calc_S2f_tf_S2_ts_djw_comps() (in lib.spectral_densities.model_free_components)	collapse_ensemble() (in Internal)	ctypes_structure_module (in dep_check)
calc_S2f_tf_S2_ts_djw_dS2f() (in lib.spectral_densities.model_free)	color_code_noe() (in gui.analyses.results_analysis)	ctypes_structure_module_message (in dep_check)
calc_S2f_tf_S2_ts_djw_dtf() (in lib.spectral_densities.model_free)	colour	cubic_ext() (in minfx.line_search.interpolate)
calc_S2f_tf_S2_ts_jw() (in lib.spectral_densities.model_free)	colour1 (in About_base)	cubic_int() (in minfx.line_search.interpolate)
calc_S2f_tf_S2_ts_jw_comps() (in lib.spectral_densities.model_free_components)	colour1 (in About_relax)	current() (in pipe_control.pipes)
calc_S2f_tf_S2s_ts_d2jw_dS2fdtf() (in lib.spectral_densities.model_free)	colour1 (in About_window)	current_analysis_name() (in Analysis_controller)
calc_S2f_tf_S2s_ts_d2jw_dtf2() (in lib.spectral_densities.model_free)	colour2 (in About_base)	current_analysis_type() (in Analysis_controller)
calc_S2f_tf_S2s_ts_djw_comps() (in lib.spectral_densities.model_free_components)	colour2 (in About_relax)	current_data() (in Analysis_controller)
calc_S2f_tf_S2s_ts_djw_dS2f() (in lib.spectral_densities.model_free)	colour2 (in About_window)	current_pipe (in Relax_data_store)
calc_S2f_tf_S2s_ts_djw_dS2s() (in lib.spectral_densities.model_free)	COLOUR_ORDER (in specific_analyses.relax_disp.data)	cursor_style() (in About_base)
calc_S2f_tf_S2s_ts_djw_dtf() (in lib.spectral_densities.model_free)	com() (in pipe_control.structure.main)	curve_fit (in lib)
calc_S2f_tf_S2s_ts_jw() (in lib.spectral_densities.model_free)	CoM() (in specific_analyses.n_state_model.uf)	custom_grid_incs() (in Frame_order_analysis)