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]
S
s2
(in
lib.text.gui
)
setUp()
(in
Test___init__
)
spheroid()
(in
pipe_control.diffusion_tensor
)
s2f
(in
lib.text.gui
)
setUp()
(in
Test___init__
)
spheroid_frame()
(in
pipe_control.angles
)
s2s
(in
lib.text.gui
)
setUp()
(in
Test_arg_check
)
Spin
(in
gui.spin_viewer.containers
)
SA_flag
(in
minfx.generic
)
setUp()
(in
Test___init__
)
spin
(in
test_suite.unit_tests._pipe_control
)
safe_replacement()
(in
Fetch_docstrings
)
setUp()
(in
Test___init__
)
spin
(in
user_functions
)
safeguard()
(in
Exact_trust_region
)
setUp()
(in
Test_internal
)
Spin_base_class
(in
test_suite.unit_tests.spin_testing_base
)
same_sequence()
(in
pipe_control.mol_res_spin
)
setUp()
(in
Test___init__
)
spin_count()
(in
Base_analysis
)
sample()
(in
Stereochem_analysis
)
setUp()
(in
Test_mol_res_spin
)
Spin_ctrl
(in
gui.analyses.elements.spin_element
)
sample_conditions
(in
bmrblib.experimental_details
)
setUp()
(in
Test_pipes
)
spin_display_params()
(in
Relax_disp_rep
)
sample_conditions_v2_1
(in
bmrblib.experimental_details
)
setUp()
(in
Test_selection
)
spin_element
(in
gui.analyses.elements
)
sample_conditions_v3_1
(in
bmrblib.experimental_details
)
setUp()
(in
Test___init__
)
spin_file_name()
(in
specific_analyses.relax_disp.cpmgfit
)
SampleConditionCitation
(in
bmrblib.experimental_details.sample_conditions
)
setUp()
(in
Test___init__
)
spin_has_frq_data()
(in
specific_analyses.relax_disp.data
)
SampleConditionCitation_v3_1
(in
bmrblib.experimental_details.sample_conditions_v3_1
)
setUp()
(in
Test___init__
)
spin_id
(in
gui.input_elements
)
SampleConditionList
(in
bmrblib.experimental_details.sample_conditions
)
setUp()
(in
Test___init__
)
Spin_id
(in
gui.input_elements.spin_id
)
SampleConditionList_v2_1
(in
bmrblib.experimental_details.sample_conditions_v2_1
)
setUp()
(in
Test___init__
)
spin_id_to_data_list()
(in
lib.selection
)
SampleConditionList_v3_1
(in
bmrblib.experimental_details.sample_conditions_v3_1
)
setUp()
(in
Test_api
)
spin_id_variants()
(in
pipe_control.mol_res_spin
)
SampleConditionsSaveframe
(in
bmrblib.experimental_details.sample_conditions
)
setUp()
(in
Test___init__
)
spin_id_variants_cleanup()
(in
pipe_control.mol_res_spin
)
SampleConditionsSaveframe_v2_1
(in
bmrblib.experimental_details.sample_conditions_v2_1
)
setUp()
(in
Test___init__
)
spin_id_variants_prune()
(in
pipe_control.mol_res_spin
)
SampleConditionsSaveframe_v3_1
(in
bmrblib.experimental_details.sample_conditions_v3_1
)
setUp()
(in
Test___init__
)
spin_ids_to_containers()
(in
specific_analyses.relax_disp.data
)
SampleConditionVariable
(in
bmrblib.experimental_details.sample_conditions
)
setUp()
(in
Test_api
)
spin_index_loop()
(in
pipe_control.mol_res_spin
)
SampleConditionVariable_v2_1
(in
bmrblib.experimental_details.sample_conditions_v2_1
)
setUp()
(in
Test_data
)
spin_isotope()
(in
Auto_relax_disp
)
SampleConditionVariable_v3_1
(in
bmrblib.experimental_details.sample_conditions_v3_1
)
setUp()
(in
Test_parameters
)
spin_isotope_heteronuc()
(in
Auto_model_free
)
save()
(in
Free_file_format
)
setUp()
(in
Test___init__
)
spin_isotope_proton()
(in
Auto_model_free
)
save()
(in
Free_file_format_window
)
setUp()
(in
Test___init__
)
spin_lock_field()
(in
specific_analyses.relax_disp.data
)
SAVE_ERROR_STATE
(in
lib.errors
)
setUp()
(in
Test___init__
)
spin_lock_offset()
(in
specific_analyses.relax_disp.data
)
save_state()
(in
lib.errors
)
setUp()
(in
Test_chi2
)
spin_loop()
(in
pipe_control.mol_res_spin
)
save_state()
(in
pipe_control.state
)
setUp()
(in
Test_relax_fit
)
spin_testing_base
(in
test_suite.unit_tests
)
SaveFrame
(in
bmrblib.pystarlib
)
setUp()
(in
Test___init__
)
spin_vars()
(in
Spin
)
SaveFrame
(in
bmrblib.pystarlib.SaveFrame
)
setUp()
(in
Align_tensor_base_class
)
Spin_view_window
(in
gui.spin_viewer.frame
)
SaveFrameTest
(in
bmrblib.pystarlib
)
setUp()
(in
Diffusion_tensor_base_class
)
spin_viewer
(in
gui
)
scale()
(in
pipe_control.value
)
setUp()
(in
Minimisation_base_class
)
SpinContainer
(in
data_store.mol_res_spin
)
scaling()
(in
Param_list
)
setUp()
(in
Molecule_base_class
)
SpinList
(in
data_store.mol_res_spin
)
scan_paths()
(in
Test_finder
)
setUp()
(in
N_state_model_base_class
)
SPLASH_SIZE
(in
gui
)
school
(in
dAuvergne06
)
setUp()
(in
Relax_data_base_class
)
split()
(in
SplitIO
)
scipy_module
(in
dep_check
)
setUp()
(in
Residue_base_class
)
split_refs()
(in
About_base
)
scons
setUp()
(in
Sequence_base_class
)
SplitIO
(in
lib.io
)
scope()
(in
Param_list
)
setUp()
(in
Spin_base_class
)
splitter
(in
gui.spin_viewer
)
SCORE_GAP_PENALTY
(in
lib.sequence_alignment.needleman_wunsch
)
setUp()
(in
Structure_base_class
)
Square
(in
lib.structure.cones
)
SCORE_MATCH
(in
lib.sequence_alignment.needleman_wunsch
)
setUp()
(in
Value_base_class
)
square_matrix_power()
(in
lib.linear_algebra.matrix_power
)
SCORE_MISMATCH
(in
lib.sequence_alignment.needleman_wunsch
)
setUp()
(in
Library
)
star_text()
(in
File
)
SCORES
(in
lib.sequence_alignment.needleman_wunsch
)
setup_bfgs()
(in
Bfgs
)
star_text()
(in
SaveFrame
)
script
(in
lib.ansi
)
setup_bug_22146_unpacking_r2a_r2b_cluster()
(in
Relax_disp
)
star_text()
(in
TagTable
)
script
(in
pipe_control
)
setup_conv_tests()
(in
Min
)
Star_version
(in
bmrblib.version
)
script
(in
user_functions
)
setup_data()
(in
Exp
)
start()
(in
relax
)
script()
(in
pipe_control.exp_info
)
setup_data()
(in
Molecule_base_class
)
StartingKey()
(in
Delay_num_cell_editor
)
script()
(in
pipe_control.script
)
setup_data()
(in
Residue_base_class
)
startTest()
(in
RelaxTestResult
)
script_definitions()
(in
Fetch_docstrings
)
setup_dipole_pair()
(in
Auto_model_free
)
state
(in
pipe_control
)
script_exec()
(in
GuiTestCase
)
setup_equations()
(in
Mf
)
state
(in
test_suite.gui_tests
)
script_exec()
(in
SystemTestCase
)
setup_fail
(in
Wiz_page
)
State
(in
test_suite.gui_tests.state
)
script_grace2images()
(in
lib.plotting.grace
)
setup_frame()
(in
Metadata_window
)
state
(in
test_suite.system_tests
)
scripts
(in
gui.components
)
setup_frame()
(in
Controller
)
State
(in
test_suite.system_tests.state
)
Scripts
(in
gui.components.scripts
)
setup_frame()
(in
Export_bmrb_window
)
state
(in
user_functions
)
SCROLL_RATE
(in
About_base
)
setup_frame()
(in
Prompt
)
State_base_class
(in
test_suite.unit_tests.state_testing_base
)
se99
(in
minfx.hessian_mods
)
setup_hansen_cpmg_data()
(in
Relax_disp
)
state_load()
(in
Main
)
se99()
(in
Hessian_mods
)
setup_hessian_mod()
(in
Hessian_mods
)
state_save()
(in
Main
)
se99()
(in
minfx.hessian_mods.se99
)
setup_identity()
(in
Test_matrix_ops
)
state_testing_base
(in
test_suite.unit_tests
)
search()
(in
lib.regex
)
setup_identity_free_rotor()
(in
Test_matrix_ops
)
statistics
(in
lib
)
second_parse()
(in
lib.software.xplor
)
setup_korzhnev_2005_data()
(in
Relax_disp
)
statistics
(in
lib.structure
)
SECTION
(in
lib.text.string
)
setup_kteilum_fmpoulsen_makke_cpmg_data()
(in
Relax_disp
)
statistics
(in
pipe_control
)
section()
(in
lib.text.sectioning
)
setup_line_search()
(in
Line_search
)
statistics
(in
user_functions
)
sectioning
(in
lib.text
)
setup_missing_r1_spins()
(in
Relax_disp
)
status
(in
auto_analyses.dauvergne_protocol
)
seekable()
(in
Bzip2Fixed
)
setup_model()
(in
Frame_order
)
status
(in
auto_analyses.frame_order
)
seekable()
(in
GzipFixed
)
setup_newton()
(in
Newton
)
status
(in
auto_analyses.noe
)
segment_path()
(in
test_suite.unit_tests.unit_test_runner
)
setup_page()
(in
Wiz_window
)
status
(in
auto_analyses.relax_disp
)
sel_all()
(in
pipe_control.selection
)
setup_paul_schanda_nov_2015()
(in
Relax_disp
)
status
(in
auto_analyses.relax_disp_repeat_cpmg
)
sel_domain()
(in
pipe_control.selection
)
setup_peak_intensity_type()
(in
ExpInfo
)
status
(in
auto_analyses.relax_fit
)
sel_interatom()
(in
pipe_control.selection
)
setup_pseudoatom_pcs()
(in
pipe_control.pcs
)
status
(in
auto_analyses.stereochem_analysis
)
sel_read()
(in
pipe_control.selection
)
setup_pseudoatom_rdc()
(in
pipe_control.rdc
)
status
(in
data_store
)
sel_spin()
(in
pipe_control.selection
)
setup_r1rho_kjaergaard()
(in
Relax_disp
)
status
(in
gui.about
)
select
(in
user_functions
)
setup_script()
(in
ExpInfo
)
status
(in
gui.analyses.auto_model_free
)
select()
(in
pipe_control.model_selection
)
setup_signal_noise_ratio()
(in
Spectrum
)
status
(in
gui.analyses.auto_noe
)
select_consist_test()
(in
New_analysis_page
)
setup_sod1wt_t25()
(in
Relax_disp
)
status
(in
gui.analyses.auto_relax_disp
)
select_custom()
(in
New_analysis_page
)
setup_thiol()
(in
ExpInfo
)
status
(in
gui.analyses.auto_rx_base
)
select_disp()
(in
New_analysis_page
)
setup_tp02_data_to_ns_r1rho_2site()
(in
Relax_disp
)
status
(in
gui.analyses.elements.model_list
)
select_ellipsoid()
(in
Protocol_mode_sel_window
)
setup_window()
(in
Spin_view_window
)
status
(in
gui.analyses.execute
)
select_event()
(in
RelaxDirDialog
)
SetValue()
(in
Boolean_ctrl
)
status
(in
gui.analyses.results_analysis
)
select_event()
(in
RelaxFileDialog
)
SetValue()
(in
Float_ctrl
)
status
(in
gui.analyses
)
select_file()
(in
File_element
)
SetValue()
(in
Spin_ctrl
)
status
(in
gui.components.base_list
)
select_final()
(in
Protocol_mode_sel_window
)
SetValue()
(in
Text_ctrl
)
status
(in
gui.components.free_file_format
)
select_full_analysis()
(in
Protocol_mode_sel_window
)
SetValue()
(in
Free_file_format
)
status
(in
gui.components.grid
)
select_local_tm()
(in
Protocol_mode_sel_window
)
SetValue()
(in
Selector_bool
)
status
(in
gui.components.molecule
)
select_mf()
(in
New_analysis_page
)
SetValue()
(in
Combo_list
)
status
(in
gui.components.relax_data
)
select_model()
(in
Auto_rx
)
SetValue()
(in
Selector_dir
)
status
(in
gui.components.relax_data_meta
)
select_model()
(in
specific_analyses.frame_order.uf
)
SetValue()
(in
File_element
)
status
(in
gui.components.spectrum
)
select_model()
(in
specific_analyses.model_free.uf
)
SetValue()
(in
Selector_file
)
status
(in
gui.controller
)
select_model()
(in
specific_analyses.n_state_model.parameters
)
SetValue()
(in
Selector_file_multiple
)
status
(in
gui.errors
)
select_model()
(in
specific_analyses.relax_disp.uf
)
SetValue()
(in
Selector_file_window
)
status
(in
gui.export_bmrb
)
select_model()
(in
specific_analyses.relax_fit.uf
)
SetValue()
(in
Sequence
)
status
(in
gui.filedialog
)
select_noe()
(in
New_analysis_page
)
SetValue()
(in
Sequence_window
)
status
(in
gui.fonts
)
select_oblate()
(in
Protocol_mode_sel_window
)
SetValue()
(in
Sequence_window_2D
)
status
(in
gui.icons
)
select_prolate()
(in
Protocol_mode_sel_window
)
SetValue()
(in
Spin_id
)
status
(in
gui.input_elements.bool
)
select_r1()
(in
New_analysis_page
)
SetValue()
(in
Value
)
status
(in
gui.input_elements.dir
)
select_r2()
(in
New_analysis_page
)
SetValue()
(in
Force_true
)
status
(in
gui.input_elements.file
)
select_sphere()
(in
Protocol_mode_sel_window
)
SetValue()
(in
Uf_page
)
status
(in
gui.input_elements.sequence
)
select_spin()
(in
Relax_disp_rep
)
sf
(in
AllChecks
)
status
(in
gui.input_elements.sequence_2D
)
selection
(in
lib
)
sf_csa_read()
(in
specific_analyses.model_free.bmrb
)
status
(in
gui.interpreter
)
Selection
(in
lib.selection
)
sf_label
(in
ChemShiftAnisotropySaveframe
)
status
(in
gui.menu
)
selection
(in
lib.structure.internal
)
sf_label
(in
EntitySaveframe
)
status
(in
gui.message
)
selection
(in
pipe_control
)
sf_label
(in
EntitySaveframe_v2_1
)
status
(in
gui.misc
)
selection
(in
test_suite.system_tests
)
sf_label
(in
CitationsSaveframe
)
status
(in
gui.pipe_editor
)
Selection
(in
test_suite.system_tests.selection
)
sf_label
(in
ExperimentSaveframe
)
status
(in
gui.relax_gui
)
selection()
(in
Internal
)
sf_label
(in
MethodSaveframe
)
status
(in
gui.relax_prompt
)
selection_win_data()
(in
Selector_file_multiple
)
sf_label
(in
MethodSaveframe_v3_1
)
status
(in
gui.results_viewer
)
selection_win_data()
(in
Sequence
)
sf_label
(in
NMRSpectrometerSaveframe
)
status
(in
gui.spin_viewer.frame
)
selection_win_show()
(in
Selector_file_multiple
)
sf_label
(in
SampleConditionsSaveframe
)
status
(in
gui.spin_viewer.tree
)
selection_win_show()
(in
Sequence
)
sf_label
(in
SoftwareSaveframe
)
status
(in
gui
)
selection_win_show()
(in
Sequence_2D
)
sf_label
(in
SoftwareSaveframe_v3_1
)
status
(in
gui.string_conv
)
Selector_bool
(in
gui.input_elements.bool
)
sf_label
(in
AutoRelaxationSaveframe
)
status
(in
gui.uf_objects
)
Selector_dir
(in
gui.input_elements.dir
)
sf_label
(in
AutoRelaxationSaveframe_v3_1
)
status
(in
gui.wizards.peak_intensity
)
Selector_file
(in
gui.input_elements.file
)
sf_label
(in
HeteronuclNOESaveframe_v2_1
)
status
(in
gui.wizards.wiz_objects
)
Selector_file_multiple
(in
gui.input_elements.file
)
sf_label
(in
HeteronuclNOESaveframe_v3_1
)
status
(in
Bieri11
)
Selector_file_window
(in
gui.input_elements.file
)
sf_label
(in
HeteronuclT1Saveframe_v2_1
)
status
(in
Clore90
)
semicolon_block_collapse()
(in
bmrblib.pystarlib.Text
)
sf_label
(in
HeteronuclT1Saveframe_v3_1
)
status
(in
Delaglio95
)
semicolon_block_expand()
(in
bmrblib.pystarlib.Text
)
sf_label
(in
HeteronuclT2Saveframe_v2_1
)
status
(in
GoddardKneller
)
semicolon_block_replace()
(in
bmrblib.pystarlib.Text
)
sf_label
(in
HeteronuclT2Saveframe_v3_1
)
status
(in
LipariSzabo82a
)
semicolons_add()
(in
bmrblib.pystarlib.Text
)
sf_label
(in
TensorSaveframe
)
status
(in
LipariSzabo82b
)
send_data_to_slaves()
(in
Processor
)
sf_label
(in
ModelFreeSaveframe
)
status
(in
Ref
)
send_data_to_slaves()
(in
multi
)
sf_label
(in
ModelFreeSaveframe_v3_1
)
status
(in
dAuvergne06
)
separator1
(in
TextTestResult
)
sf_model_free_read()
(in
specific_analyses.model_free.bmrb
)
status
(in
dAuvergneGooley03
)
separator2
(in
TextTestResult
)
sharp
(in
bmrblib.pystarlib.Text
)
status
(in
dAuvergneGooley06
)
seq_align
(in
data_store
)
sheet()
(in
lib.structure.pdb_read
)
status
(in
dAuvergneGooley07
)
sequence
(in
gui.input_elements
)
sheet()
(in
lib.structure.pdb_write
)
status
(in
dAuvergneGooley08a
)
Sequence
(in
gui.input_elements.sequence
)
sherekhan
(in
specific_analyses.relax_disp
)
status
(in
dAuvergneGooley08b
)
sequence
(in
lib
)
sherekhan_input()
(in
specific_analyses.relax_disp.sherekhan
)
status
(in
info
)
sequence
(in
pipe_control
)
Show()
(in
Results_viewer
)
status
(in
pipe_control.bmrb
)
sequence
(in
test_suite.system_tests
)
Show()
(in
Spin_view_window
)
status
(in
pipe_control.grace
)
Sequence
(in
test_suite.system_tests.sequence
)
show_apod_extract()
(in
lib.spectrum.nmrpipe
)
status
(in
pipe_control.minimise
)
sequence
(in
user_functions
)
show_apod_rmsd()
(in
lib.spectrum.nmrpipe
)
status
(in
pipe_control.mol_res_spin
)
sequence_2D
(in
gui.input_elements
)
show_apod_rmsd_dir_to_files()
(in
lib.spectrum.nmrpipe
)
status
(in
pipe_control.molmol
)
Sequence_2D
(in
gui.input_elements.sequence_2D
)
show_apod_rmsd_to_file()
(in
lib.spectrum.nmrpipe
)
status
(in
pipe_control.pipes
)
sequence_alignment
(in
lib
)
show_controller()
(in
Main
)
status
(in
pipe_control.pymol_control
)
sequence_alignment()
(in
pipe_control.structure.main
)
show_pipe_editor()
(in
Main
)
status
(in
pipe_control.result_files
)
Sequence_alignments
(in
data_store.seq_align
)
show_prompt()
(in
Main
)
status
(in
pipe_control.script
)
Sequence_base_class
(in
test_suite.unit_tests.sequence_testing_base
)
show_results_viewer()
(in
Main
)
status
(in
pipe_control.state
)
Sequence_list_ctrl
(in
gui.input_elements.sequence
)
show_results_viewer_no_warn()
(in
Main
)
status
(in
pipe_control.structure.geometric
)
sequence_testing_base
(in
test_suite.unit_tests
)
show_results_viewer_safe()
(in
Main
)
status
(in
pipe_control.structure.main
)
Sequence_window
(in
gui.input_elements.sequence
)
show_tree()
(in
Main
)
status
(in
pipe_control.system
)
Sequence_window_2D
(in
gui.input_elements.sequence_2D
)
showApod_software
(in
dep_check
)
status
(in
pipe_control.value
)
set()
(in
AlignTensorData
)
ShowModal()
(in
Question
)
status
(in
prompt.command
)
set()
(in
DiffTensorData
)
showwarning_tb()
(in
lib.warnings
)
status
(in
prompt.help
)
set()
(in
Verbosity
)
shrink()
(in
Simplex
)
status
(in
prompt.interpreter
)
set()
(in
pipe_control.align_tensor
)
signal_noise_ratio()
(in
pipe_control.spectrum
)
status
(in
prompt.uf_docstring
)
set()
(in
pipe_control.diffusion_tensor
)
SIGNBIT
(in
lib.float
)
status
(in
prompt.uf_objects
)
set()
(in
pipe_control.minimise
)
sim_init_values()
(in
API_base
)
status
(in
relax
)
set()
(in
pipe_control.value
)
sim_init_values()
(in
Frame_order
)
status
(in
scons.manuals
)
set()
(in
Param_list
)
sim_init_values()
(in
Model_free
)
status
(in
setup
)
set_align_id()
(in
pipe_control.align_tensor
)
sim_init_values()
(in
N_state_model
)
status
set_background()
(in
About_base
)
sim_init_values()
(in
Relax_disp
)
Status
(in
status
)
set_base_cpmg()
(in
Relax_disp_rep
)
sim_pack_data()
(in
API_base
)
status
(in
test_suite.gui_tests.base_classes
)
set_bitmap_mol()
(in
Mol_res_spin_tree
)
sim_pack_data()
(in
Frame_order
)
status
(in
test_suite.gui_tests.bruker
)
set_bitmap_res()
(in
Mol_res_spin_tree
)
sim_pack_data()
(in
N_state_model
)
status
(in
test_suite.gui_tests.frame_order
)
set_bitmap_spin()
(in
Mol_res_spin_tree
)
sim_pack_data()
(in
Relax_disp
)
status
(in
test_suite.gui_tests.general
)
set_box_label()
(in
Base_list
)
sim_pack_data()
(in
Relax_fit
)
status
(in
test_suite.gui_tests.model_free
)
set_box_label()
(in
Molecule
)
sim_return_chi2()
(in
API_base
)
status
(in
test_suite.gui_tests.n_state_model
)
set_box_label()
(in
Relax_data_meta_list
)
sim_return_chi2()
(in
Model_free
)
status
(in
test_suite.gui_tests.noe
)
set_dist()
(in
pipe_control.interatomic
)
sim_return_param()
(in
API_base
)
status
(in
test_suite.gui_tests.relax_disp
)
set_domain()
(in
pipe_control.align_tensor
)
sim_return_param()
(in
Consistency_tests
)
status
(in
test_suite.gui_tests.rx
)
set_error()
(in
API_base
)
sim_return_param()
(in
Frame_order
)
status
(in
test_suite.gui_tests.state
)
set_error()
(in
Consistency_tests
)
sim_return_param()
(in
Jw_mapping
)
status
(in
test_suite.gui_tests.test_user_functions
)
set_error()
(in
Frame_order
)
sim_return_param()
(in
Model_free
)
status
(in
test_suite.relax_test_loader
)
set_error()
(in
Jw_mapping
)
sim_return_param()
(in
N_state_model
)
status
(in
test_suite.relax_test_runner
)
set_error()
(in
Model_free
)
sim_return_param()
(in
Relax_disp
)
status
(in
test_suite.system_tests.angles
)
set_error()
(in
N_state_model
)
sim_return_selected()
(in
API_base
)
status
(in
test_suite.system_tests.bmrb
)
set_error()
(in
Relax_disp
)
sim_return_selected()
(in
Consistency_tests
)
status
(in
test_suite.system_tests.bruker
)
set_errors()
(in
pipe_control.pcs
)
sim_return_selected()
(in
Frame_order
)
status
(in
test_suite.system_tests.chemical_shift
)
set_errors()
(in
pipe_control.rdc
)
sim_return_selected()
(in
Jw_mapping
)
status
(in
test_suite.system_tests.consistency_tests
)
set_exp_type()
(in
specific_analyses.relax_disp.data
)
sim_return_selected()
(in
Model_free
)
status
(in
test_suite.system_tests.dasha
)
set_fixed()
(in
AlignTensorData
)
sim_return_selected()
(in
Relax_disp
)
status
(in
test_suite.system_tests.diffusion_tensor
)
set_fixed()
(in
DiffTensorData
)
SIMILARITY_DNA
(in
lib.sequence_alignment.substitution_matrices
)
status
(in
test_suite.system_tests.frame_order
)
set_frequency()
(in
pipe_control.spectrometer
)
SIMILARITY_DNA_SEQ
(in
lib.sequence_alignment.substitution_matrices
)
status
(in
test_suite.system_tests.generic
)
set_frq()
(in
specific_analyses.consistency_tests.uf
)
simple_types
(in
BaseArgError
)
status
(in
test_suite.system_tests.grace
)
set_frq()
(in
specific_analyses.jw_mapping.uf
)
simple_types
(in
RelaxBinError
)
status
(in
test_suite.system_tests.interatomic
)
set_init_state()
(in
Analysis_controller
)
simple_types
(in
RelaxBoolError
)
status
(in
test_suite.system_tests.jw_mapping
)
set_int()
(in
Relax_disp_rep
)
simple_types
(in
RelaxBoolListBoolError
)
status
(in
test_suite.system_tests.load_spins
)
set_intensity_and_error()
(in
Relax_disp_rep
)
simple_types
(in
RelaxFloatError
)
status
(in
test_suite.system_tests.model_elimination
)
set_memo_id()
(in
Slave_command
)
simple_types
(in
RelaxFunctionError
)
status
(in
test_suite.system_tests.model_free
)
set_model()
(in
Internal
)
simple_types
(in
RelaxIntError
)
status
(in
test_suite.system_tests.model_selection
)
set_param_values()
(in
API_base
)
simple_types
(in
RelaxIntListIntError
)
status
(in
test_suite.system_tests.mol_res_spin
)
set_param_values()
(in
Model_free
)
simple_types
(in
RelaxIntStrError
)
status
(in
test_suite.system_tests.n_state_model
)
set_param_values()
(in
N_state_model
)
simple_types
(in
RelaxNoneBoolError
)
status
(in
test_suite.system_tests.noe
)
set_param_values()
(in
Relax_disp
)
simple_types
(in
RelaxNoneBoolListBoolError
)
status
(in
test_suite.system_tests.noe_restraints
)
set_selected_sim()
(in
API_base
)
simple_types
(in
RelaxNoneFloatError
)
status
(in
test_suite.system_tests.palmer
)
set_selected_sim()
(in
Frame_order
)
simple_types
(in
RelaxNoneFloatListError
)
status
(in
test_suite.system_tests.pcs
)
set_selected_sim()
(in
Model_free
)
simple_types
(in
RelaxNoneFloatStrListError
)
status
(in
test_suite.system_tests.peak_lists
)
set_selected_sim()
(in
Relax_disp
)
simple_types
(in
RelaxNoneFunctionError
)
status
(in
test_suite.system_tests.pipes
)
set_selection()
(in
Model_sel_window
)
simple_types
(in
RelaxNoneIntError
)
status
(in
test_suite.system_tests.rdc
)
set_self()
(in
Relax_disp_rep
)
simple_types
(in
RelaxNoneIntListIntError
)
status
(in
test_suite.system_tests.relax_data
)
set_seq_next_fn()
(in
Wiz_window
)
simple_types
(in
RelaxNoneIntStrError
)
status
(in
test_suite.system_tests.relax_disp
)
set_settings_leastsq()
(in
Exp
)
simple_types
(in
RelaxNoneListBoolError
)
status
(in
test_suite.system_tests.relax_fit
)
set_settings_minfx()
(in
Exp
)
simple_types
(in
RelaxNoneListError
)
status
(in
test_suite.system_tests.results
)
set_sim_num()
(in
AlignTensorData
)
simple_types
(in
RelaxNoneListIntError
)
status
(in
test_suite.system_tests.sequence
)
set_sim_num()
(in
DiffTensorData
)
simple_types
(in
RelaxNoneListNumError
)
status
(in
test_suite.system_tests.spectrum
)
set_spin_element()
(in
pipe_control.mol_res_spin
)
simple_types
(in
RelaxNoneListStrError
)
status
(in
test_suite.system_tests.state
)
set_spin_isotope()
(in
pipe_control.mol_res_spin
)
simple_types
(in
RelaxNoneNumError
)
status
(in
test_suite.system_tests.structure
)
set_temperature()
(in
pipe_control.spectrometer
)
simple_types
(in
RelaxNoneNumStrListNumStrError
)
status
(in
test_suite.system_tests.unit_vectors
)
set_title()
(in
TagTable
)
simple_types
(in
RelaxNoneNumTupleNumError
)
status
(in
test_suite.test_suite_runner
)
set_type()
(in
DiffTensorData
)
simple_types
(in
RelaxNoneStrError
)
status
(in
test_suite.unit_tests._lib._dispersion.test_matrix_exponential
)
set_up_spins()
(in
Value_base_class
)
simple_types
(in
RelaxNoneStrFileError
)
status
(in
test_suite.unit_tests._lib._frame_order.test_matrix_ops
)
set_update()
(in
API_base
)
simple_types
(in
RelaxNoneStrListError
)
status
(in
test_suite.unit_tests._pipe_control._structure.test_internal
)
set_update()
(in
Model_free
)
simple_types
(in
RelaxNoneStrListNumError
)
status
(in
test_suite.unit_tests._specific_analyses._model_free.test_api
)
set_vals()
(in
Free_file_format
)
simple_types
(in
RelaxNoneStrListStrError
)
status
(in
test_suite.unit_tests._specific_analyses._relax_disp.test_checks
)
set_value()
(in
Model_list
)
simple_types
(in
RelaxNoneTupleError
)
status
(in
test_suite.unit_tests._specific_analyses._relax_disp.test_data
)
set_value()
(in
specific_analyses.relax_disp.parameters
)
simple_types
(in
RelaxNoneTupleNumError
)
status
(in
test_suite.unit_tests._target_functions.test_relax_fit
)
set_vector()
(in
pipe_control.structure.main
)
simple_types
(in
RelaxNoneValListValError
)
status
(in
test_suite.unit_tests.package_checking
)
set_version()
(in
Star_version
)
simple_types
(in
RelaxNumError
)
status
(in
test_suite.unit_tests.relax_data_testing_base
)
set_xh_vect()
(in
specific_analyses.model_free.back_compat
)
simple_types
(in
RelaxNumStrListNumStrError
)
status
(in
test_suite.unit_tests.sequence_testing_base
)
setup
simple_types
(in
RelaxNumTupleError
)
status
(in
test_suite.unit_tests.state_testing_base
)
Setup
(in
setup
)
simple_types
(in
RelaxNumTupleNumError
)
status
(in
test_suite.verification_tests.library
)
setup()
(in
Citations
)
simple_types
(in
RelaxStrError
)
status
(in
test_suite.verification_tests.status_object
)
setup()
(in
Molecule
)
simple_types
(in
RelaxStrFileError
)
status
(in
version
)
setup()
(in
Relax_data_list
)
simple_types
(in
RelaxStrFileListStrFileError
)
status_object
(in
test_suite.verification_tests
)
setup()
(in
Relax_data_meta_list
)
simple_types
(in
RelaxStrListError
)
Status_object
(in
test_suite.verification_tests.status_object
)
setup()
(in
Scripts
)
simple_types
(in
RelaxStrListNumError
)
status_setup()
(in
dAuvergne_protocol
)
setup()
(in
Software
)
simple_types
(in
RelaxStrListStrError
)
status_start()
(in
Relax_disp_rep
)
setup()
(in
Spectra_list
)
simple_types
(in
RelaxValListValError
)
status_stop()
(in
Relax_disp_rep
)
setup()
(in
Font
)
simplex
(in
minfx
)
std()
(in
lib.statistics
)
setup()
(in
Relax_icons
)
Simplex
(in
minfx.simplex
)
stdio_capture()
(in
Processor
)
setup()
(in
lib.warnings
)
simplex()
(in
minfx.simplex
)
stdio_restore()
(in
Processor
)
setUp()
(in
GuiTestCase
)
simulate()
(in
specific_analyses.frame_order.uf
)
steepest_descent
(in
minfx
)
setUp()
(in
Bmrb
)
simulation
(in
lib.frame_order
)
Steepest_descent
(in
minfx.steepest_descent
)
setUp()
(in
Bruker
)
simulation_flag()
(in
Param_list
)
steepest_descent()
(in
minfx.steepest_descent
)
setUp()
(in
Ct
)
SINGLE
(in
bmrblib.pystarlib.Text
)
Steihaug
(in
minfx.steihaug_cg
)
setUp()
(in
Frame_order
)
singleq
(in
bmrblib.pystarlib.Text
)
steihaug()
(in
minfx.steihaug_cg
)
setUp()
(in
Interatomic
)
size
(in
Local_tm_list
)
steihaug_cg
(in
minfx
)
setUp()
(in
Jw_mapping
)
size
(in
Mf_list
)
stereochem_analysis
(in
auto_analyses
)
setUp()
(in
Align_tensor
)
size
(in
Disp_model_list
)
Stereochem_analysis
(in
auto_analyses.stereochem_analysis
)
setUp()
(in
Bmrb
)
size
(in
Model_list
)
stopTest()
(in
GuiTestResult
)
setUp()
(in
Bruker
)
SIZE
(in
Free_file_format_window
)
stopTest()
(in
RelaxTestResult
)
setUp()
(in
Chemical_shift
)
SIZE
(in
Selector_file_window
)
store_bc_data()
(in
specific_analyses.frame_order.optimisation
)
setUp()
(in
Ct
)
SIZE
(in
Sequence_window
)
store_data()
(in
MF_minimise_command
)
setUp()
(in
Dasha
)
size
(in
Results_viewer
)
STR
(in
lib.errors
)
setUp()
(in
Diffusion_tensor
)
SIZE_BUTTON
(in
Free_file_format_window
)
str_to_gui()
(in
gui.string_conv
)
setUp()
(in
Frame_order
)
SIZE_BUTTON
(in
Selector_file_window
)
strf
(in
AllChecks
)
setUp()
(in
Grace
)
SIZE_BUTTON
(in
Sequence_window
)
stride_help_array_rank_NE_NS_NM_NO_ND_x()
(in
lib.dispersion.matrix_power
)
setUp()
(in
Jw
)
size_button
(in
Wiz_page
)
stride_help_element_rank_NE_NS_NM_NO_ND()
(in
lib.dispersion.matrix_power
)
setUp()
(in
Load_spins
)
size_cols()
(in
Base_list
)
stride_help_square_matrix_rank_NE_NS_NM_NO_ND_x_x()
(in
lib.dispersion.matrix_power
)
setUp()
(in
Modelim
)
size_cols()
(in
Pipe_editor
)
string
(in
lib.text
)
setUp()
(in
Mf
)
size_cols()
(in
Results_viewer
)
string_conv
(in
gui
)
setUp()
(in
Mol_res_spin
)
size_graphic_panel
(in
Base_analysis
)
string_transpose()
(in
Test_kronecker_product
)
setUp()
(in
Noe
)
size_square_button
(in
Free_file_format
)
strip()
(in
lib.io
)
setUp()
(in
Noe_restraints
)
size_square_button
(in
Wiz_page
)
strip_comments()
(in
lib.software.xplor
)
setUp()
(in
Palmer
)
skip_function()
(in
API_base
)
strip_lead()
(in
lib.text.string
)
setUp()
(in
Peak_lists
)
skip_function()
(in
Hybrid
)
strip_remarks()
(in
Structure
)
setUp()
(in
Relax_disp
)
skip_function()
(in
Model_free
)
structural_noise()
(in
pipe_control.pcs
)
setUp()
(in
Relax_fit
)
Slave_command
(in
multi.slave_commands
)
structure
(in
bmrblib
)
setUp()
(in
Results
)
slave_commands
(in
multi
)
structure
(in
lib
)
setUp()
(in
Selection
)
slave_receive_commands()
(in
Mpi4py_processor
)
structure
(in
pipe_control
)
setUp()
(in
Sequence
)
slave_receive_commands()
(in
Multi_processor
)
structure
(in
test_suite.system_tests
)
setUp()
(in
Spectrum
)
Slave_storage_command
(in
multi.slave_commands
)
Structure
(in
test_suite.system_tests.structure
)
setUp()
(in
State
)
sn_ratio_deselection()
(in
pipe_control.spectrum
)
structure
(in
user_functions
)
setUp()
(in
Structure
)
sn_ratio_selection()
(in
pipe_control.spectrum
)
Structure_base_class
(in
test_suite.unit_tests.structure_testing_base
)
setUp()
(in
Unit_vectors
)
Sobol_data
(in
target_functions.frame_order
)
structure_loop()
(in
pipe_control.structure.main
)
setUp()
(in
Value
)
sobol_data
(in
target_functions.frame_order
)
structure_testing_base
(in
test_suite.unit_tests
)
setUp()
(in
Test___init__
)
sobol_setup()
(in
Frame_order_analysis
)
style
(in
About_base
)
setUp()
(in
Test___init__
)
sobol_setup()
(in
specific_analyses.frame_order.uf
)
style
(in
About_window
)
setUp()
(in
Test_align_tensor
)
software
(in
bmrblib.experimental_details
)
subprocess_module
(in
dep_check
)
setUp()
(in
Test_diff_tensor
)
Software
(in
bmrblib.experimental_details.software
)
subprocess_module
(in
lib.spectrum.nmrpipe
)
setUp()
(in
Test_mol_res_spin
)
software
(in
gui.components
)
subprocess_module_message
(in
dep_check
)
setUp()
(in
Test_pipe_container
)
Software
(in
gui.components.software
)
SUBSECTION
(in
lib.text.string
)
setUp()
(in
Test_seq_align
)
software
(in
lib
)
subsection()
(in
lib.text.sectioning
)
setUp()
(in
Test___init__
)
SOFTWARE
(in
pipe_control.exp_info
)
substitution_matrices
(in
lib.sequence_alignment
)
setUp()
(in
Test___init__
)
software()
(in
pipe_control.exp_info
)
subsubsection()
(in
lib.text.sectioning
)
setUp()
(in
Test___init__
)
software_select()
(in
pipe_control.exp_info
)
subsubtitle()
(in
lib.text.sectioning
)
setUp()
(in
Test___init__
)
software_setup()
(in
ExpInfo
)
subtitle()
(in
lib.text.sectioning
)
setUp()
(in
Test___init__
)
Software_store
(in
pipe_control.exp_info
)
subtitle()
(in
test_suite.formatting
)
setUp()
(in
Test___init__
)
software_v3_1
(in
bmrblib.experimental_details
)
suite
(in
Test_finder
)
setUp()
(in
Test_b14
)
Software_v3_1
(in
bmrblib.experimental_details.software_v3_1
)
summarise()
(in
auto_analyses.frame_order
)
setUp()
(in
Test_cr72
)
SoftwareCitation
(in
bmrblib.experimental_details.software
)
summarize_results()
(in
Relax_disp_rep
)
setUp()
(in
Test_cr72_full_cluster_one_field
)
SoftwareCitation_v3_1
(in
bmrblib.experimental_details.software_v3_1
)
summary()
(in
Test_suite_runner
)
setUp()
(in
Test_cr72_full_cluster_three_fields
)
SoftwareSaveframe
(in
bmrblib.experimental_details.software
)
summary_line()
(in
test_suite.formatting
)
setUp()
(in
Test_dpl94
)
SoftwareSaveframe_v3_1
(in
bmrblib.experimental_details.software_v3_1
)
summary_skipped()
(in
Test_suite_runner
)
setUp()
(in
Test_it99
)
sort_filenames()
(in
lib.io
)
superimpose
(in
lib.structure
)
setUp()
(in
Test_lm63
)
sort_models()
(in
specific_analyses.relax_disp.model
)
superimpose()
(in
Stereochem_analysis
)
setUp()
(in
Test_m61
)
sourceid
(in
Clore90
)
superimpose()
(in
pipe_control.structure.main
)
setUp()
(in
Test_m61b
)
sourceid
(in
LipariSzabo82a
)
svd()
(in
pipe_control.align_tensor
)
setUp()
(in
Test_matrix_exponential
)
sourceid
(in
LipariSzabo82b
)
swap_extension()
(in
lib.io
)
setUp()
(in
Test_mmq_cr72
)
space
(in
bmrblib.pystarlib.Text
)
switch()
(in
pipe_control.pipes
)
setUp()
(in
Test_mp05
)
space_probe()
(in
Frame_order
)
switch_page()
(in
Analysis_controller
)
setUp()
(in
Test_ns_cpmg_2site_3d
)
spacer_button
(in
Question
)
switch_pipes()
(in
Results_viewer
)
setUp()
(in
Test_ns_cpmg_2site_expanded
)
spacer_horizontal
(in
Base_analysis
)
sync_ds()
(in
Auto_model_free
)
setUp()
(in
Test_ns_mmq_3site
)
spacer_main
(in
Question
)
sync_ds()
(in
Auto_noe
)
setUp()
(in
Test_ns_r1rho_3site
)
sparky
(in
lib.spectrum
)
sync_ds()
(in
Auto_relax_disp
)
setUp()
(in
Test_tap03
)
specific_analyses
sync_ds()
(in
Auto_rx
)
setUp()
(in
Test_tp02
)
specific_setup()
(in
RelaxSaveframe
)
sync_ds()
(in
Grid_base
)
setUp()
(in
Test_tsmfk01
)
specific_setup()
(in
ModelFreeSaveframe_v3_2
)
sync_ds()
(in
Main
)
setUp()
(in
Test___init__
)
Spectra_list
(in
gui.components.spectrum
)
sys_info
(in
user_functions
)
setUp()
(in
Test_matrix_ops
)
spectral_densities
(in
lib
)
sys_info()
(in
Info_box
)
setUp()
(in
Test___init__
)
Spectral_error_type_page
(in
gui.wizards.peak_intensity
)
system
(in
dep_check
)
setUp()
(in
Test_rotations
)
spectrometer
(in
pipe_control
)
SYSTEM
(in
lib.compat
)
setUp()
(in
Test___init__
)
spectrometer
(in
user_functions
)
system
(in
pipe_control
)
setUp()
(in
Test_kronecker_product
)
spectrum
(in
gui.components
)
SYSTEM
(in
test_suite.system_tests.frame_order
)
setUp()
(in
Test___init__
)
spectrum
(in
lib
)
SYSTEM
(in
test_suite.system_tests.model_free
)
setUp()
(in
Test___init__
)
spectrum
(in
pipe_control
)
system()
(in
prompt.command
)
setUp()
(in
Test___init__
)
spectrum
(in
test_suite.system_tests
)
system_cwd()
(in
Main
)
setUp()
(in
Test___init__
)
Spectrum
(in
test_suite.system_tests.spectrum
)
system_path_pattern
(in
Unit_test_runner
)
setUp()
(in
Test___init__
)
spectrum
(in
user_functions
)
System_test_runner
(in
test_suite.system_tests
)
setUp()
(in
Test___init__
)
spectrum_type()
(in
specific_analyses.noe.uf
)
system_tests
(in
test_suite
)
setUp()
(in
Test___init__
)
sphere()
(in
pipe_control.diffusion_tensor
)
SystemTestCase
(in
test_suite.system_tests.base_classes
)
setUp()
(in
Test___init__
)
spherical_to_cartesian()
(in
lib.geometry.coord_transform
)
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