Author: bugman
Date: Thu Jan 3 18:22:51 2008
New Revision: 4292
URL: http://svn.gna.org/viewcvs/relax?rev=4292&view=rev
Log:
Merged revisions 4272-4291 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3
........
r4272 | bugman | 2008-01-03 15:52:24 +0100 (Thu, 03 Jan 2008) | 5 lines
Finished converting generic_fns.value.set() to the new relax design.
The function is now considerably simpler.
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r4273 | bugman | 2008-01-03 15:57:05 +0100 (Thu, 03 Jan 2008) | 5 lines
Fixed 2 of the diffusion tensor parameter setting unit tests.
These are the invalid parameter combinations, where the
RelaxUnknownParamCombError is thrown.
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r4274 | bugman | 2008-01-03 15:59:55 +0100 (Thu, 03 Jan 2008) | 5 lines
Bug fix for the generic_fns.diffusion_tensor.set() function.
For detecting the parameter combination {Dpar, Dper}, Dpar was being
checked twice!
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r4276 | bugman | 2008-01-03 16:12:47 +0100 (Thu, 03 Jan 2008) | 3 lines
Updated the return_value() method of the Common_functions base class to the
new relax design.
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r4277 | bugman | 2008-01-03 17:18:57 +0100 (Thu, 03 Jan 2008) | 3 lines
Updated the set() method of the Common_functions base class to the new
relax design.
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r4278 | bugman | 2008-01-03 17:19:57 +0100 (Thu, 03 Jan 2008) | 3 lines
Updated the set_update() dummy method of the Common_functions base class to
the new relax design.
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r4279 | bugman | 2008-01-03 17:22:13 +0100 (Thu, 03 Jan 2008) | 3 lines
Updated the set_update() method of the Model_free class to the new relax
design.
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r4280 | bugman | 2008-01-03 17:28:19 +0100 (Thu, 03 Jan 2008) | 3 lines
Updated the docstrings for epydoc for the set() and set_update() class
methods recently updated.
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r4281 | bugman | 2008-01-03 17:39:12 +0100 (Thu, 03 Jan 2008) | 5 lines
Bug fix in the model-free parameter setting code (in the default_value()
method).
The parameter checking should have looked for lower case parameter names!
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r4282 | bugman | 2008-01-03 17:43:17 +0100 (Thu, 03 Jan 2008) | 3 lines
Updated the model-free code to use the default CSA and bond length vals in
phyical_constants.py.
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r4283 | bugman | 2008-01-03 17:48:10 +0100 (Thu, 03 Jan 2008) | 5 lines
Bug fix for all the spin specific unit tests of the value setting function.
The spin_id should have started with the atom identifier '@' rather than
the residue identifier ':'.
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r4284 | bugman | 2008-01-03 17:49:51 +0100 (Thu, 03 Jan 2008) | 5 lines
Another bug fix for the spin specific unit tests of the value setting
function.
No spin data was being set up for the reduced spectral density mapping
parameter tests.
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r4285 | bugman | 2008-01-03 18:00:02 +0100 (Thu, 03 Jan 2008) | 3 lines
Updated the set() method of the Jw_mapping class to the new relax design.
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r4286 | bugman | 2008-01-03 18:03:57 +0100 (Thu, 03 Jan 2008) | 6 lines
Set __docformat__ for all model-free docstrings which are appended to the
user function docstrings.
The line added at the end of the docstring was:
__docformat__ = "plaintext"
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r4287 | bugman | 2008-01-03 18:04:59 +0100 (Thu, 03 Jan 2008) | 6 lines
Set __docformat__ for all jw mapping docstrings which are appended to the
user function docstrings.
The line added at the end of the docstring was:
__docformat__ = "plaintext"
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r4288 | bugman | 2008-01-03 18:06:21 +0100 (Thu, 03 Jan 2008) | 3 lines
Slackened the testing of floats in a parameter setting unit test.
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r4289 | bugman | 2008-01-03 18:08:36 +0100 (Thu, 03 Jan 2008) | 5 lines
Bug fix in the specific_fns.jw_mapping.default_value() function.
The CSA parameter check should have been for lower case.
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r4290 | bugman | 2008-01-03 18:09:25 +0100 (Thu, 03 Jan 2008) | 3 lines
Slackened the testing of floats in a parameter setting unit test.
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r4291 | bugman | 2008-01-03 18:19:58 +0100 (Thu, 03 Jan 2008) | 6 lines
Bug fix for the jw mapping parameter setting function
specific_fns.jw_mapping.set().
The J(w) parameters do not have default values and now a new RelaxError,
RelaxParamSetError, is
raised if these params are set. All the relevent unit tests have been
updated for this change.
........
Modified:
branches/N_state_model/ (props changed)
branches/N_state_model/generic_fns/diffusion_tensor.py
branches/N_state_model/generic_fns/value.py
branches/N_state_model/relax_errors.py
branches/N_state_model/specific_fns/base_class.py
branches/N_state_model/specific_fns/jw_mapping.py
branches/N_state_model/specific_fns/model_free/model_free.py
branches/N_state_model/test_suite/unit_tests/value_testing_base.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/N_state_model/generic_fns/diffusion_tensor.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/generic_fns/diffusion_tensor.py?rev=4292&r1=4291&r2=4292&view=diff
Modified: branches/N_state_model/generic_fns/value.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/generic_fns/value.py?rev=4292&r1=4291&r2=4292&view=diff
Modified: branches/N_state_model/relax_errors.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/relax_errors.py?rev=4292&r1=4291&r2=4292&view=diff
Modified: branches/N_state_model/specific_fns/base_class.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/specific_fns/base_class.py?rev=4292&r1=4291&r2=4292&view=diff
Modified: branches/N_state_model/specific_fns/jw_mapping.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/specific_fns/jw_mapping.py?rev=4292&r1=4291&r2=4292&view=diff
Modified: branches/N_state_model/specific_fns/model_free/model_free.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/specific_fns/model_free/model_free.py?rev=4292&r1=4291&r2=4292&view=diff
Modified: branches/N_state_model/test_suite/unit_tests/value_testing_base.py
URL:
http://svn.gna.org/viewcvs/relax/branches/N_state_model/test_suite/unit_tests/value_testing_base.py?rev=4292&r1=4291&r2=4292&view=diff
r4292 - in /branches/N_state_model: ./ generic_fns/ specific_fns/ specific_fns/model_free/ test_suite/unit_tests/