Author: bugman
Date: Thu Jul 31 11:37:33 2008
New Revision: 7045
URL: http://svn.gna.org/viewcvs/relax?rev=7045&view=rev
Log:
Merged revisions 7022-7028,7030-7040 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3
........
r7022 | semor | 2008-07-29 22:38:16 +0200 (Tue, 29 Jul 2008) | 3 lines
Simplified the code by removing useless lines as well as converting one
remaining flag to bool.
........
r7023 | semor | 2008-07-29 22:44:42 +0200 (Tue, 29 Jul 2008) | 3 lines
Removed an unused import.
........
r7024 | semor | 2008-07-29 23:01:07 +0200 (Tue, 29 Jul 2008) | 3 lines
Added the "dir" variable to the palmer commands.
........
r7025 | semor | 2008-07-29 23:04:16 +0200 (Tue, 29 Jul 2008) | 3 lines
Uncommented a line as this was a temporary and local change which should
not have been committed.
........
r7026 | semor | 2008-07-29 23:15:27 +0200 (Tue, 29 Jul 2008) | 9 lines
A temporary directory is now created for ModelFree4 output.
This directory is only created and the function for deleting it still needs
to be added.
This follows the proposal of Edward d'Auvergne at:
https://mail.gna.org/public/relax-devel/2008-07/msg00038.html (message ID:
7f080ed10807290219m18601df6nf2df7e91848a9680@xxxxxxxxxxxxxx).
........
r7027 | semor | 2008-07-29 23:20:16 +0200 (Tue, 29 Jul 2008) | 3 lines
Added the setUp() and tearDown() functions to the palmer system test code.
........
r7028 | semor | 2008-07-29 23:40:09 +0200 (Tue, 29 Jul 2008) | 7 lines
Improved the tearDown() function so the temporary directory is deleted
after the test.
This follows r7026 (http://svn.gna.org/viewcvs/relax?rev=7026&view=rev) and
the proposal of Edward
d'Auvergne at:
https://mail.gna.org/public/relax-devel/2008-07/msg00038.html (message ID:
7f080ed10807290219m18601df6nf2df7e91848a9680@xxxxxxxxxxxxxx).
........
r7030 | semor | 2008-07-30 18:13:00 +0200 (Wed, 30 Jul 2008) | 14 lines
Changed the location of the temporary directory creation command.
This change now avoids relax from crashing on Windows when the directory
does not exist and follows
a post by Ed at:
https://mail.gna.org/public/relax-devel/2008-07/msg00047.html (message ID:
7f080ed10807291455k1d11d51fpdb2382806e55efdb@xxxxxxxxxxxxxx).
Note that the directory separators are fine in Windows using the current
syntax ('/').
Also, note that this change is temporary as the temporary directory should
be placed in an user
accessible location and created as proposed by Ed in a post at:
https://mail.gna.org/public/relax-devel/2008-07/msg00048.html (message ID:
7f080ed10807291507x5b6aab2fv820a6fc219fc7e2b@xxxxxxxxxxxxxx).
........
r7031 | semor | 2008-07-30 20:09:59 +0200 (Wed, 30 Jul 2008) | 3 lines
Removed a deprecated run argument.
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r7032 | semor | 2008-07-30 20:39:37 +0200 (Wed, 30 Jul 2008) | 3 lines
Converted run arguments to pipes.
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r7033 | semor | 2008-07-30 20:45:55 +0200 (Wed, 30 Jul 2008) | 3 lines
Removed run arguments.
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r7034 | semor | 2008-07-30 20:54:50 +0200 (Wed, 30 Jul 2008) | 3 lines
More conversions to the new design.
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r7035 | semor | 2008-07-30 21:00:30 +0200 (Wed, 30 Jul 2008) | 3 lines
More conversion to the new design.
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r7036 | semor | 2008-07-30 21:10:06 +0200 (Wed, 30 Jul 2008) | 5 lines
Other conversions to the new design.
Removal of run arguments and introduction of the exists_mol_res_spin_data()
function.
........
r7037 | semor | 2008-07-30 21:13:07 +0200 (Wed, 30 Jul 2008) | 3 lines
Still the same conversions to the desing concerning the check for the
loading of the sequence.
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r7038 | semor | 2008-07-30 21:22:46 +0200 (Wed, 30 Jul 2008) | 3 lines
Corrected a comment to the new design.
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r7039 | semor | 2008-07-30 21:26:04 +0200 (Wed, 30 Jul 2008) | 3 lines
Conversion of a run argument to pipe, etc.
........
r7040 | semor | 2008-07-30 22:37:09 +0200 (Wed, 30 Jul 2008) | 7 lines
Changed the temporary directory to the system's default location using
'tempfile.mkdtemp'.
This is in response to a post of Edward d'Auvergne at:
https://mail.gna.org/public/relax-devel/2008-07/msg00048.html (message ID:
7f080ed10807291507x5b6aab2fv820a6fc219fc7e2b@xxxxxxxxxxxxxx).
........
Modified:
branches/rdc_analysis/ (props changed)
branches/rdc_analysis/generic_fns/dasha.py
branches/rdc_analysis/generic_fns/grace.py
branches/rdc_analysis/generic_fns/relax_data.py
branches/rdc_analysis/generic_fns/structure/geometric.py
branches/rdc_analysis/generic_fns/value.py
branches/rdc_analysis/specific_fns/consistency_tests.py
branches/rdc_analysis/specific_fns/hybrid.py
branches/rdc_analysis/specific_fns/jw_mapping.py
branches/rdc_analysis/specific_fns/model_free/main.py
branches/rdc_analysis/specific_fns/noe.py
branches/rdc_analysis/test_suite/system_tests/palmer.py
branches/rdc_analysis/test_suite/system_tests/scripts/palmer.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/rdc_analysis/generic_fns/dasha.py
URL:
http://svn.gna.org/viewcvs/relax/branches/rdc_analysis/generic_fns/dasha.py?rev=7045&r1=7044&r2=7045&view=diff
Modified: branches/rdc_analysis/generic_fns/grace.py
URL:
http://svn.gna.org/viewcvs/relax/branches/rdc_analysis/generic_fns/grace.py?rev=7045&r1=7044&r2=7045&view=diff
Modified: branches/rdc_analysis/generic_fns/relax_data.py
URL:
http://svn.gna.org/viewcvs/relax/branches/rdc_analysis/generic_fns/relax_data.py?rev=7045&r1=7044&r2=7045&view=diff
Modified: branches/rdc_analysis/generic_fns/structure/geometric.py
URL:
http://svn.gna.org/viewcvs/relax/branches/rdc_analysis/generic_fns/structure/geometric.py?rev=7045&r1=7044&r2=7045&view=diff
Modified: branches/rdc_analysis/generic_fns/value.py
URL:
http://svn.gna.org/viewcvs/relax/branches/rdc_analysis/generic_fns/value.py?rev=7045&r1=7044&r2=7045&view=diff
Modified: branches/rdc_analysis/specific_fns/consistency_tests.py
URL:
http://svn.gna.org/viewcvs/relax/branches/rdc_analysis/specific_fns/consistency_tests.py?rev=7045&r1=7044&r2=7045&view=diff
Modified: branches/rdc_analysis/specific_fns/hybrid.py
URL:
http://svn.gna.org/viewcvs/relax/branches/rdc_analysis/specific_fns/hybrid.py?rev=7045&r1=7044&r2=7045&view=diff
Modified: branches/rdc_analysis/specific_fns/jw_mapping.py
URL:
http://svn.gna.org/viewcvs/relax/branches/rdc_analysis/specific_fns/jw_mapping.py?rev=7045&r1=7044&r2=7045&view=diff
Modified: branches/rdc_analysis/specific_fns/model_free/main.py
URL:
http://svn.gna.org/viewcvs/relax/branches/rdc_analysis/specific_fns/model_free/main.py?rev=7045&r1=7044&r2=7045&view=diff
Modified: branches/rdc_analysis/specific_fns/noe.py
URL:
http://svn.gna.org/viewcvs/relax/branches/rdc_analysis/specific_fns/noe.py?rev=7045&r1=7044&r2=7045&view=diff
Modified: branches/rdc_analysis/test_suite/system_tests/palmer.py
URL:
http://svn.gna.org/viewcvs/relax/branches/rdc_analysis/test_suite/system_tests/palmer.py?rev=7045&r1=7044&r2=7045&view=diff
Modified: branches/rdc_analysis/test_suite/system_tests/scripts/palmer.py
URL:
http://svn.gna.org/viewcvs/relax/branches/rdc_analysis/test_suite/system_tests/scripts/palmer.py?rev=7045&r1=7044&r2=7045&view=diff
r7045 - in /branches/rdc_analysis: ./ generic_fns/ generic_fns/structure/ specific_fns/ specific_fns/model_free/ test_suite/...