Author: bugman Date: Thu Mar 8 14:13:09 2012 New Revision: 15466 URL: http://svn.gna.org/viewcvs/relax?rev=15466&view=rev Log: Merged revisions 15425-15428,15432,15435,15440-15445,15453,15455,15457,15459-15464 via svnmerge from svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3 ........ r15425 | bugman | 2012-03-01 14:28:41 +0100 (Thu, 01 Mar 2012) | 3 lines Epydoc docstring fixes. ........ r15426 | bugman | 2012-03-01 15:06:41 +0100 (Thu, 01 Mar 2012) | 3 lines Bug fix for old numpy versions missing the float16 object. ........ r15427 | bugman | 2012-03-01 16:15:40 +0100 (Thu, 01 Mar 2012) | 7 lines The finish button in the new analysis wizard has been renamed to "Start". This is based on feedback from Hessam Rezaei-Ghaleh. Now all of the text and icons for the wizards can be programmatically changed. ........ r15428 | bugman | 2012-03-01 16:32:34 +0100 (Thu, 01 Mar 2012) | 3 lines Expansion and improvements to the multi-processor package and module docstrings. ........ r15432 | bugman | 2012-03-02 17:43:08 +0100 (Fri, 02 Mar 2012) | 5 lines Expansion of the multi-processor package documentation with a step by step usage guide. This should significantly increase the usability of the package by clarifying how one should use it. ........ r15435 | bugman | 2012-03-05 16:43:16 +0100 (Mon, 05 Mar 2012) | 6 lines Expansion of the multi-processor API documentation. This should now be close to complete and should cover all concepts required to use the multi-processor package. ........ r15440 | bugman | 2012-03-06 14:32:08 +0100 (Tue, 06 Mar 2012) | 11 lines Bug fix for relax not starting on 32-bit machines. This was first reported by Hugh Dannatt <h dott dannatt att sheffield dot ac dot uk> in the post at https://mail.gna.org/public/relax-users/2012-03/msg00011.html. The numpy.float128 object appears to be missing on 32-bit numpy versions (at least on old numpy versions). In such cases, float128 is aliased to float64. This should only affect relax users who place special high precision (float128) objects into the relax data store, when loading a save file with such an object on a 32-bit machine. This should practically never happen! ........ r15441 | bugman | 2012-03-06 15:15:10 +0100 (Tue, 06 Mar 2012) | 5 lines Expansion and improvement of the information printed out by 'relax --info'. A number of details are now taken from the sys module. ........ r15442 | bugman | 2012-03-06 15:48:22 +0100 (Tue, 06 Mar 2012) | 3 lines For Unix and GNU/Linux systems, the relax info printout now shows the ram and swap size. ........ r15443 | bugman | 2012-03-06 15:57:04 +0100 (Tue, 06 Mar 2012) | 3 lines Updated the value.set user function unknown parameter error message to list the known ones. ........ r15444 | bugman | 2012-03-06 17:11:02 +0100 (Tue, 06 Mar 2012) | 3 lines Added support for the memory size on MS Windows to the relax info print out. ........ r15445 | bugman | 2012-03-06 18:29:47 +0100 (Tue, 06 Mar 2012) | 3 lines Updated the multi-processor package __all__ list. ........ r15453 | bugman | 2012-03-07 13:39:06 +0100 (Wed, 07 Mar 2012) | 3 lines Important import fix! ........ r15455 | bugman | 2012-03-07 13:42:05 +0100 (Wed, 07 Mar 2012) | 3 lines More important import fixes for the multi-processor package. ........ r15457 | bugman | 2012-03-07 16:45:24 +0100 (Wed, 07 Mar 2012) | 7 lines Removal of another relax dependency from the multi-processor package and elimination of "^[[1034h". This should hopefully be the last relax dependency removed. This import of dep_check was the source of the "^[[1034h" character being printed at the start of the relax stdout stream, though the reason for it's existence is unclear! ........ r15459 | bugman | 2012-03-08 10:44:57 +0100 (Thu, 08 Mar 2012) | 5 lines Added a reference implementation to the multi-processor package. This is to demonstrate to users of the package how an implementation is created. ........ r15460 | bugman | 2012-03-08 11:26:19 +0100 (Thu, 08 Mar 2012) | 5 lines Documentation improvements to the multi-processor test implementation. This should make it very easy to see what is happening at all stages. ........ r15461 | bugman | 2012-03-08 12:15:15 +0100 (Thu, 08 Mar 2012) | 3 lines Added some documentation about master processors on Linux 2.6 eating 100% of one CPU core. ........ r15462 | bugman | 2012-03-08 12:16:01 +0100 (Thu, 08 Mar 2012) | 3 lines The profiling print out is now sorted by cumulative time for better debugging. ........ r15463 | bugman | 2012-03-08 12:18:42 +0100 (Thu, 08 Mar 2012) | 6 lines Updated the test implementation timing numbers. This is after using 'echo "1" > /proc/sys/kernel/sched_compat_yield' to fix the Linux OpenMPI problem. ........ r15464 | bugman | 2012-03-08 12:21:13 +0100 (Thu, 08 Mar 2012) | 5 lines Copied the OpenMPI + Linux 2.6 100% master problem to the API documentation. The text has also been updated a little. ........ Added: branches/cst/multi/test_implementation.py - copied unchanged from r15464, 1.3/multi/test_implementation.py Modified: branches/cst/ (props changed) branches/cst/arg_check.py branches/cst/data/relax_xml.py branches/cst/generic_fns/align_tensor.py branches/cst/generic_fns/structure/superimpose.py branches/cst/gui/analyses/wizard.py branches/cst/gui/interpreter.py branches/cst/gui/wizard.py branches/cst/info.py branches/cst/multi/__init__.py branches/cst/multi/api.py branches/cst/multi/misc.py branches/cst/multi/mpi4py_processor.py branches/cst/multi/multi_processor_base.py branches/cst/multi/processor.py branches/cst/multi/uni_processor.py branches/cst/relax_io.py branches/cst/specific_fns/model_free/main.py [This mail would be too long, it was shortened to contain the URLs only.] Modified: branches/cst/arg_check.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/arg_check.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/data/relax_xml.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/data/relax_xml.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/generic_fns/align_tensor.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/generic_fns/align_tensor.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/generic_fns/structure/superimpose.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/generic_fns/structure/superimpose.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/gui/analyses/wizard.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/gui/analyses/wizard.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/gui/interpreter.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/gui/interpreter.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/gui/wizard.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/gui/wizard.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/info.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/info.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/multi/__init__.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/multi/__init__.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/multi/api.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/multi/api.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/multi/misc.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/multi/misc.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/multi/mpi4py_processor.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/multi/mpi4py_processor.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/multi/multi_processor_base.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/multi/multi_processor_base.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/multi/processor.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/multi/processor.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/multi/uni_processor.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/multi/uni_processor.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/relax_io.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/relax_io.py?rev=15466&r1=15465&r2=15466&view=diff Modified: branches/cst/specific_fns/model_free/main.py URL: http://svn.gna.org/viewcvs/relax/branches/cst/specific_fns/model_free/main.py?rev=15466&r1=15465&r2=15466&view=diff