Author: bugman
Date: Thu Mar 8 14:25:30 2012
New Revision: 15467
URL: http://svn.gna.org/viewcvs/relax?rev=15467&view=rev
Log:
Merged revisions
15425-15428,15432,15435,15440-15445,15453,15455,15457,15459-15464 via
svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3
........
r15425 | bugman | 2012-03-01 14:28:41 +0100 (Thu, 01 Mar 2012) | 3 lines
Epydoc docstring fixes.
........
r15426 | bugman | 2012-03-01 15:06:41 +0100 (Thu, 01 Mar 2012) | 3 lines
Bug fix for old numpy versions missing the float16 object.
........
r15427 | bugman | 2012-03-01 16:15:40 +0100 (Thu, 01 Mar 2012) | 7 lines
The finish button in the new analysis wizard has been renamed to "Start".
This is based on feedback from Hessam Rezaei-Ghaleh.
Now all of the text and icons for the wizards can be programmatically
changed.
........
r15428 | bugman | 2012-03-01 16:32:34 +0100 (Thu, 01 Mar 2012) | 3 lines
Expansion and improvements to the multi-processor package and module
docstrings.
........
r15432 | bugman | 2012-03-02 17:43:08 +0100 (Fri, 02 Mar 2012) | 5 lines
Expansion of the multi-processor package documentation with a step by step
usage guide.
This should significantly increase the usability of the package by
clarifying how one should use it.
........
r15435 | bugman | 2012-03-05 16:43:16 +0100 (Mon, 05 Mar 2012) | 6 lines
Expansion of the multi-processor API documentation.
This should now be close to complete and should cover all concepts required
to use the
multi-processor package.
........
r15440 | bugman | 2012-03-06 14:32:08 +0100 (Tue, 06 Mar 2012) | 11 lines
Bug fix for relax not starting on 32-bit machines.
This was first reported by Hugh Dannatt <h dott dannatt att sheffield dot
ac dot uk> in the post at
https://mail.gna.org/public/relax-users/2012-03/msg00011.html.
The numpy.float128 object appears to be missing on 32-bit numpy versions
(at least on old numpy
versions). In such cases, float128 is aliased to float64. This should
only affect relax users who
place special high precision (float128) objects into the relax data store,
when loading a save file
with such an object on a 32-bit machine. This should practically never
happen!
........
r15441 | bugman | 2012-03-06 15:15:10 +0100 (Tue, 06 Mar 2012) | 5 lines
Expansion and improvement of the information printed out by 'relax --info'.
A number of details are now taken from the sys module.
........
r15442 | bugman | 2012-03-06 15:48:22 +0100 (Tue, 06 Mar 2012) | 3 lines
For Unix and GNU/Linux systems, the relax info printout now shows the ram
and swap size.
........
r15443 | bugman | 2012-03-06 15:57:04 +0100 (Tue, 06 Mar 2012) | 3 lines
Updated the value.set user function unknown parameter error message to list
the known ones.
........
r15444 | bugman | 2012-03-06 17:11:02 +0100 (Tue, 06 Mar 2012) | 3 lines
Added support for the memory size on MS Windows to the relax info print out.
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r15445 | bugman | 2012-03-06 18:29:47 +0100 (Tue, 06 Mar 2012) | 3 lines
Updated the multi-processor package __all__ list.
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r15453 | bugman | 2012-03-07 13:39:06 +0100 (Wed, 07 Mar 2012) | 3 lines
Important import fix!
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r15455 | bugman | 2012-03-07 13:42:05 +0100 (Wed, 07 Mar 2012) | 3 lines
More important import fixes for the multi-processor package.
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r15457 | bugman | 2012-03-07 16:45:24 +0100 (Wed, 07 Mar 2012) | 7 lines
Removal of another relax dependency from the multi-processor package and
elimination of "^[[1034h".
This should hopefully be the last relax dependency removed. This import of
dep_check was the source
of the "^[[1034h" character being printed at the start of the relax stdout
stream, though the reason
for it's existence is unclear!
........
r15459 | bugman | 2012-03-08 10:44:57 +0100 (Thu, 08 Mar 2012) | 5 lines
Added a reference implementation to the multi-processor package.
This is to demonstrate to users of the package how an implementation is
created.
........
r15460 | bugman | 2012-03-08 11:26:19 +0100 (Thu, 08 Mar 2012) | 5 lines
Documentation improvements to the multi-processor test implementation.
This should make it very easy to see what is happening at all stages.
........
r15461 | bugman | 2012-03-08 12:15:15 +0100 (Thu, 08 Mar 2012) | 3 lines
Added some documentation about master processors on Linux 2.6 eating 100%
of one CPU core.
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r15462 | bugman | 2012-03-08 12:16:01 +0100 (Thu, 08 Mar 2012) | 3 lines
The profiling print out is now sorted by cumulative time for better
debugging.
........
r15463 | bugman | 2012-03-08 12:18:42 +0100 (Thu, 08 Mar 2012) | 6 lines
Updated the test implementation timing numbers.
This is after using 'echo "1" > /proc/sys/kernel/sched_compat_yield' to fix
the Linux OpenMPI
problem.
........
r15464 | bugman | 2012-03-08 12:21:13 +0100 (Thu, 08 Mar 2012) | 5 lines
Copied the OpenMPI + Linux 2.6 100% master problem to the API documentation.
The text has also been updated a little.
........
Added:
branches/inversion-recovery/multi/test_implementation.py
- copied unchanged from r15464, 1.3/multi/test_implementation.py
Modified:
branches/inversion-recovery/ (props changed)
branches/inversion-recovery/arg_check.py
branches/inversion-recovery/data/relax_xml.py
branches/inversion-recovery/generic_fns/align_tensor.py
branches/inversion-recovery/generic_fns/structure/superimpose.py
branches/inversion-recovery/gui/analyses/wizard.py
branches/inversion-recovery/gui/interpreter.py
branches/inversion-recovery/gui/wizard.py
branches/inversion-recovery/info.py
branches/inversion-recovery/multi/__init__.py
branches/inversion-recovery/multi/api.py
branches/inversion-recovery/multi/misc.py
branches/inversion-recovery/multi/mpi4py_processor.py
branches/inversion-recovery/multi/multi_processor_base.py
branches/inversion-recovery/multi/processor.py
branches/inversion-recovery/multi/uni_processor.py
branches/inversion-recovery/relax_io.py
branches/inversion-recovery/specific_fns/model_free/main.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/inversion-recovery/arg_check.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/arg_check.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/data/relax_xml.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/data/relax_xml.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/generic_fns/align_tensor.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/generic_fns/align_tensor.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/generic_fns/structure/superimpose.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/generic_fns/structure/superimpose.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/gui/analyses/wizard.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/gui/analyses/wizard.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/gui/interpreter.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/gui/interpreter.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/gui/wizard.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/gui/wizard.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/info.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/info.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/multi/__init__.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/multi/__init__.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/multi/api.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/multi/api.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/multi/misc.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/multi/misc.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/multi/mpi4py_processor.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/multi/mpi4py_processor.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/multi/multi_processor_base.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/multi/multi_processor_base.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/multi/processor.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/multi/processor.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/multi/uni_processor.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/multi/uni_processor.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/relax_io.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/relax_io.py?rev=15467&r1=15466&r2=15467&view=diff
Modified: branches/inversion-recovery/specific_fns/model_free/main.py
URL:
http://svn.gna.org/viewcvs/relax/branches/inversion-recovery/specific_fns/model_free/main.py?rev=15467&r1=15466&r2=15467&view=diff
r15467 - in /branches/inversion-recovery: ./ data/ generic_fns/ generic_fns/structure/ gui/ gui/analyses/ multi/ specific_fn...