r16312 - in /1.3/test_suite/system_tests: __init__.py mol_res_spin.py -- May 16, 2012 - 12:25

Author: bugman
Date: Wed May 16 12:25:52 2012
New Revision: 16312

URL: http://svn.gna.org/viewcvs/relax?rev=16312&view=rev
Log:
Created a system test Mol_res_spin.test_residue_delete() demonstrating a 
failure of the user function.

Deleting the first residue removes the entire sequence!


Added:
    1.3/test_suite/system_tests/mol_res_spin.py
Modified:
    1.3/test_suite/system_tests/__init__.py

Modified: 1.3/test_suite/system_tests/__init__.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/test_suite/system_tests/__init__.py?rev=16312&r1=16311&r2=16312&view=diff
==============================================================================
--- 1.3/test_suite/system_tests/__init__.py (original)
+++ 1.3/test_suite/system_tests/__init__.py Wed May 16 12:25:52 2012
@@ -44,6 +44,7 @@
 from model_elimination import Modelim
 from model_free import Mf
 from model_selection import Modsel
+from mol_res_spin import Mol_res_spin
 from n_state_model import N_state_model
 from noe import Noe
 from noe_restraints import Noe_restraints
@@ -145,6 +146,7 @@
             suite_array.append(TestLoader().loadTestsFromTestCase(Modelim))
             suite_array.append(TestLoader().loadTestsFromTestCase(Mf))
             suite_array.append(TestLoader().loadTestsFromTestCase(Modsel))
+            
suite_array.append(TestLoader().loadTestsFromTestCase(Mol_res_spin))
             
suite_array.append(TestLoader().loadTestsFromTestCase(N_state_model))
             suite_array.append(TestLoader().loadTestsFromTestCase(Noe))
             
suite_array.append(TestLoader().loadTestsFromTestCase(Noe_restraints))

Added: 1.3/test_suite/system_tests/mol_res_spin.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/test_suite/system_tests/mol_res_spin.py?rev=16312&view=auto
==============================================================================
--- 1.3/test_suite/system_tests/mol_res_spin.py (added)
+++ 1.3/test_suite/system_tests/mol_res_spin.py Wed May 16 12:25:52 2012
@@ -1,0 +1,64 @@
+###############################################################################
+#                                                                            
 #
+# Copyright (C) 2012 Edward d'Auvergne                                       
 #
+#                                                                            
 #
+# This file is part of the program relax.                                    
 #
+#                                                                            
 #
+# relax is free software; you can redistribute it and/or modify              
 #
+# it under the terms of the GNU General Public License as published by       
 #
+# the Free Software Foundation; either version 2 of the License, or          
 #
+# (at your option) any later version.                                        
 #
+#                                                                            
 #
+# relax is distributed in the hope that it will be useful,                   
 #
+# but WITHOUT ANY WARRANTY; without even the implied warranty of             
 #
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the              
 #
+# GNU General Public License for more details.                               
 #
+#                                                                            
 #
+# You should have received a copy of the GNU General Public License          
 #
+# along with relax; if not, write to the Free Software                       
 #
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA  
 #
+#                                                                            
 #
+###############################################################################
+
+# Module docstring.
+"""System tests of the molecule, residue, and spin sequence operators."""
+
+
+# Python module imports.
+from os import sep
+
+# relax module imports.
+from base_classes import SystemTestCase
+from data import Relax_data_store; ds = Relax_data_store()
+from status import Status; status = Status()
+
+
+class Mol_res_spin(SystemTestCase):
+    """Class for testing the mol_res_spin functions."""
+
+    def setUp(self):
+        """Set up for all the functional tests."""
+
+        # Create the data pipe.
+        self.interpreter.pipe.create('mf', 'mf')
+
+
+    def test_residue_delete(self):
+        """Test residue deletion."""
+
+        # Read a PDB file.
+        self.interpreter.structure.read_pdb(file='sphere.pdb', 
dir=status.install_path + 
sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'sphere')
+
+        # Load the spins.
+        self.interpreter.structure.load_spins()
+
+        # Test the original sequence data.
+        self.assertEqual(len(cdp.mol), 1)
+        self.assertEqual(len(cdp.mol[0].res), 9)
+
+        # Delete the first residue.
+        self.interpreter.residue.delete(res_id='#sphere_mol1:1&:GLY')
+
+        # Test the remaining sequence data.
+        self.assertEqual(len(cdp.mol), 1)
+        self.assertEqual(len(cdp.mol[0].res), 8)