r16313 - in /1.3: ./ generic_fns/ test_suite/system_tests/ test_suite/unit_tests/_generic_fns/ -- May 16, 2012 - 17:11

Author: bugman
Date: Wed May 16 17:11:02 2012
New Revision: 16313

URL: http://svn.gna.org/viewcvs/relax?rev=16313&view=rev
Log:
Changed the behaviour of the generate_spin_id() and 
generate_spin_id_data_array() functions.

This is a large change affecting many parts of the code base.  The problem 
that this solves is the
incorrect usage of the '&' character in spin IDs, tripping up on the powerful 
Selection object of
Chris MacRaild.

For example, the spin ID ':2&:Glu' cannot be correctly handled.  This 
actually matches all residues
with the number 2, and all residues with the name 'Glu'.  It is very strange 
that this has not been
noticed before!

Modified:
    1.3/generic_fns/mol_res_spin.py
    1.3/generic_fns/paramag.py
    1.3/generic_fns/pcs.py
    1.3/generic_fns/rdc.py
    1.3/generic_fns/relax_data.py
    1.3/generic_fns/selection.py
    1.3/generic_fns/sequence.py
    1.3/generic_fns/spectrum.py
    1.3/generic_fns/value.py
    1.3/relax_io.py
    1.3/test_suite/system_tests/mol_res_spin.py
    1.3/test_suite/system_tests/rdc.py
    1.3/test_suite/unit_tests/_generic_fns/test_mol_res_spin.py

[This mail would be too long, it was shortened to contain the URLs only.]

Modified: 1.3/generic_fns/mol_res_spin.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/mol_res_spin.py?rev=16313&r1=16312&r2=16313&view=diff

Modified: 1.3/generic_fns/paramag.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/paramag.py?rev=16313&r1=16312&r2=16313&view=diff

Modified: 1.3/generic_fns/pcs.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/pcs.py?rev=16313&r1=16312&r2=16313&view=diff

Modified: 1.3/generic_fns/rdc.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/rdc.py?rev=16313&r1=16312&r2=16313&view=diff

Modified: 1.3/generic_fns/relax_data.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/relax_data.py?rev=16313&r1=16312&r2=16313&view=diff

Modified: 1.3/generic_fns/selection.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/selection.py?rev=16313&r1=16312&r2=16313&view=diff

Modified: 1.3/generic_fns/sequence.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/sequence.py?rev=16313&r1=16312&r2=16313&view=diff

Modified: 1.3/generic_fns/spectrum.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/spectrum.py?rev=16313&r1=16312&r2=16313&view=diff

Modified: 1.3/generic_fns/value.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/value.py?rev=16313&r1=16312&r2=16313&view=diff

Modified: 1.3/relax_io.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/relax_io.py?rev=16313&r1=16312&r2=16313&view=diff

Modified: 1.3/test_suite/system_tests/mol_res_spin.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/test_suite/system_tests/mol_res_spin.py?rev=16313&r1=16312&r2=16313&view=diff

Modified: 1.3/test_suite/system_tests/rdc.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/test_suite/system_tests/rdc.py?rev=16313&r1=16312&r2=16313&view=diff

Modified: 1.3/test_suite/unit_tests/_generic_fns/test_mol_res_spin.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/test_suite/unit_tests/_generic_fns/test_mol_res_spin.py?rev=16313&r1=16312&r2=16313&view=diff